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Report for CCDS73120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73120.1 Public Homo sapiens 10 ZNF488 24 110 108 CCDS HistoryNCBI Gene:118738Re-query CCDS DB by CCDS ID:73120.1Re-query CCDS DB by GeneID:118738See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73120.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585316.3 ENSP00000462269.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000585316.3Link to Ensembl Protein Viewer:ENSP00000462269.1Re-query CCDS DB by Nucleotide ID:ENST00000585316Re-query CCDS DB by Protein ID:ENSP00000462269
Original member Current member NCBI NM_001346932.2 NP_001333861.1 Accepted alive Link to Nucleotide Sequence:NM_001346932.2Link to Protein Sequence:NP_001333861.1Re-query CCDS DB by Nucleotide ID:NM_001346932Re-query CCDS DB by Protein ID:NP_001333861Link to BLAST:NP_001333861.1
Original member Current member NCBI NM_001346933.2 NP_001333862.1 Accepted alive Link to Nucleotide Sequence:NM_001346933.2Link to Protein Sequence:NP_001333862.1Re-query CCDS DB by Nucleotide ID:NM_001346933Re-query CCDS DB by Protein ID:NP_001333862Link to BLAST:NP_001333862.1
Original member Current member NCBI NM_001346934.2 NP_001333863.1 Accepted alive Link to Nucleotide Sequence:NM_001346934.2Link to Protein Sequence:NP_001333863.1Re-query CCDS DB by Nucleotide ID:NM_001346934Re-query CCDS DB by Protein ID:NP_001333863Link to BLAST:NP_001333863.1
Original member Current member NCBI NM_001346935.2 NP_001333864.1 Accepted alive Link to Nucleotide Sequence:NM_001346935.2Link to Protein Sequence:NP_001333864.1Re-query CCDS DB by Nucleotide ID:NM_001346935Re-query CCDS DB by Protein ID:NP_001333864Link to BLAST:NP_001333864.1
Original member Current member NCBI NM_001346936.2 NP_001333865.1 Accepted alive Link to Nucleotide Sequence:NM_001346936.2Link to Protein Sequence:NP_001333865.1Re-query CCDS DB by Nucleotide ID:NM_001346936Re-query CCDS DB by Protein ID:NP_001333865Link to BLAST:NP_001333865.1
Original member Current member NCBI NM_153034.4 NP_694579.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153034.4Link to Protein Sequence:NP_694579.1Re-query CCDS DB by Nucleotide ID:NM_153034Re-query CCDS DB by Protein ID:NP_694579Link to BLAST:NP_694579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333861.1 340 Q96MN9-1 340 100% 0 0
NP_001333862.1 340 Q96MN9-1 340 100% 0 0
NP_001333863.1 340 Q96MN9-1 340 100% 0 0
NP_001333864.1 340 Q96MN9-1 340 100% 0 0
NP_001333865.1 340 Q96MN9-1 340 100% 0 0
NP_694579.1 340 Q96MN9-1 340 100% 0 0

Chromosomal Locations for CCDS 73120.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 47367807 47368829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGCCAGAGTGGCCACCTTGCTTATCTGTGGCCCCGGCCCTGGTGATCACCATGGCAGCTGGGAAGGGAG
CCCCGTTGAGCCCATCGGCTGAAAACAGATGGCGACTTAGCGAACCTGAGCTGGGCCGGGGCTGCAAGCC
AGTGCTGCTCGAGAAGACGAACCGCCTGGGCCCTGAGGCTGCTGTGGGCAGGGCGGGCCGGGATGTGGGC
AGTGCGGAGCTGGCACTGTTGGTAGCCCCAGGCAAGCCCCGACCTGGCAAGCCGCTGCCCCCGAAGACAC
GTGGAGAGCAGAGGCAGAGCGCCTTCACGGAGCTGCCGAGGATGAAGGACCGGCAGGTGGATGCTCAGGC
CCAGGAGAGGGAGCACGATGACCCCACAGGCCAACCTGGTGCCCCACAGCTGACCCAGAACATCCCCAGA
GGCCCAGCTGGCAGCAAAGTCTTCTCTGTGTGGCCCAGCGGAGCACGAAGTGAGCAAAGAAGCGCCTTTA
GCAAACCAACCAAGCGACCAGCAGAGAGGCCTGAGCTAACCTCAGTCTTCCCTGCAGGGGAATCTGCAGA
TGCCCTGGGGGAGCTGTCTGGACTCCTCAACACTACAGACCTCGCTTGTTGGGGTCGACTTTCAACTCCC
AAGCTTTTGGTTGGTGATTTGTGGAACTTGCAAGCATTGCCACAGAATGCTCCACTCTGTAGCACTTTTC
TGGGTGCCCCTACACTGTGGCTGGAGCATACCCAGGCCCAGGTGCCCCCACCCTCATCATCCTCCACCAC
TTCGTGGGCCCTCCTGCCACCCACCCTCACCTCCCTGGGCTTGTCCACCCAGAACTGGTGTGCAAAGTGC
AACCTGTCCTTTCGCCTAACGTCCGACCTGGTCTTTCACATGCGATCCCACCACAAAAAGGAGCATGCGG
GGCCTGACCCACATTCTCAGAAGCGGAGAGAAGAGGCCCTTGCCTGCCCTGTGTGCCAGGAGCACTTCCG
GGAGCGCCACCACCTCTCCCGGCACATGACTTCTCACAGCTAG

Translation (340 aa):
MPEWPPCLSVAPALVITMAAGKGAPLSPSAENRWRLSEPELGRGCKPVLLEKTNRLGPEAAVGRAGRDVG
SAELALLVAPGKPRPGKPLPPKTRGEQRQSAFTELPRMKDRQVDAQAQEREHDDPTGQPGAPQLTQNIPR
GPAGSKVFSVWPSGARSEQRSAFSKPTKRPAERPELTSVFPAGESADALGELSGLLNTTDLACWGRLSTP
KLLVGDLWNLQALPQNAPLCSTFLGAPTLWLEHTQAQVPPPSSSSTTSWALLPPTLTSLGLSTQNWCAKC
NLSFRLTSDLVFHMRSHHKKEHAGPDPHSQKRREEALACPVCQEHFRERHHLSRHMTSHS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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