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Report for CCDS73365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73365.1 Public Homo sapiens 11 C11orf54 24 110 108 CCDS HistoryNCBI Gene:28970Re-query CCDS DB by CCDS ID:73365.1Re-query CCDS DB by GeneID:28970See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73365.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617482.4 ENSP00000477694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617482.4Link to Ensembl Protein Viewer:ENSP00000477694.1Re-query CCDS DB by Nucleotide ID:ENST00000617482Re-query CCDS DB by Protein ID:ENSP00000477694
Original member Current member NCBI NM_001286071.2 NP_001273000.1 Accepted alive Link to Nucleotide Sequence:NM_001286071.2Link to Protein Sequence:NP_001273000.1Re-query CCDS DB by Nucleotide ID:NM_001286071Re-query CCDS DB by Protein ID:NP_001273000Link to BLAST:NP_001273000.1
Original member Current member NCBI NM_001351992.2 NP_001338921.1 Accepted alive Link to Nucleotide Sequence:NM_001351992.2Link to Protein Sequence:NP_001338921.1Re-query CCDS DB by Nucleotide ID:NM_001351992Re-query CCDS DB by Protein ID:NP_001338921Link to BLAST:NP_001338921.1

Chromosomal Locations for CCDS 73365.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93747394 93747448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93750346 93750444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753682 93753755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753936 93754037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93757316 93757465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93759742 93759858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93761515 93761688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCTTGTGCTGAGTTTTCTTTTCATGTACCAAGTCTTGAAGAGCTTGCTGGAGTTATGCAGAAGGGGT
TAAAAGATAACTTTGCTGATGTCCAGGTCTCTGTAGTTGATTGCCCTGATTTGACTAAGGAACCCTTTAC
CTTTCCTGTAAAAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTTACTTATTGCCT
CTTGTAAACCAAAAAAAAGTTTATGATCTGAATAAAATTGCAAAAGAAATCAAGCTGCCTGGAGCCTTTA
TTCTTGGAGCAGGAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGGTAATTGAGGTGAAAGCCAA
AAGAAGAACTGGACCACTTAACTTTGTGACTTGTATGAGAGAGACCCTGGAAAAACATTATGGAAATAAG
CCTATAGGAATGGGAGGTACTTTCATAATTCAGAAGGGAAAAGTGAAGTCTCACATTATGCCTGCAGAAT
TTTCTTCCTGCCCCTTGAACTCTGATGAAGAAGTGAATAAATGGTTGCATTTTTATGAAATGAAAGCTCC
TTTGGTTTGTCTACCAGTTTTTGTCTCCAGAGACCCAGGGTTTGATTTGCGACTGGAGCACACTCATTTT
TTTAGTCGTCATGGAGAAGGTGGACACTACCATTATGACACTACTCCAGATATAGTGGAATATCTTGGAT
ACTTCTTACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACGCATTCAATTGGGCGAGATTA
A

Translation (256 aa):
MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLP
LVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEVIEVKAKRRTGPLNFVTCMRETLEKHYGNK
PIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHF
FSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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