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Report for CCDS73462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73462.1 Public Homo sapiens 12 TMEM117 24 110 108 CCDS HistoryNCBI Gene:84216Re-query CCDS DB by CCDS ID:73462.1Re-query CCDS DB by GeneID:84216See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000551577.5 ENSP00000448595.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551577.5Link to Ensembl Protein Viewer:ENSP00000448595.1Re-query CCDS DB by Nucleotide ID:ENST00000551577Re-query CCDS DB by Protein ID:ENSP00000448595
Original member Current member NCBI NM_001286211.2 NP_001273140.1 Accepted alive Link to Nucleotide Sequence:NM_001286211.2Link to Protein Sequence:NP_001273140.1Re-query CCDS DB by Nucleotide ID:NM_001286211Re-query CCDS DB by Protein ID:NP_001273140Link to BLAST:NP_001273140.1

Chromosomal Locations for CCDS 73462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 43844652 43844928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43944210 43944342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44143525 44143624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44211290 44211387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44299580 44299739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44388026 44388064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGGTAAAGACTTTCGTTACTATTTCCAGCATCCCTGGTCTCGCATGATTGTGGCTTACTTGGTGATCT
TCTTTAACTTCTTAATATTTGCGGAGGACCCAGTTTCTCATAGCCAAACAGAAGCCAATGTTATTGTTGT
TGGAAACTGTTTTTCATTTGTTACAAATAAATACCCTAGAGGAGTTGGCTGGAGGATTTTGAAGGTGCTT
CTATGGCTACTTGCCATTCTCACAGGACTAATAGCTGGCAAATTTCTGTTCCATCAGCGTTTGTTTGGTC
AGTTGCTCCGATTAAAAATGTTTCGAGAAGATCATGGGTCGTGGATGACAATGTTCTTCAGCACAATTCT
CTTTCTCTTCATATTTTCTCACATATACAACACGATTCTTCTAATGGATGGGAACATGGGAGCATATATC
ATTACAGACTATATGGGCATCCGAAATGAAAGTTTCATGAAATTAGCTGCAGTAGGGACCTGGATGGGGG
ACTTTGTCACAGCTTGGATGGTCACTGATATGATGCTTCAGGACAAACCCTATCCTGACTGGGGAAAATC
AGCAAGAGCTTTCTGGAAGAAAGGAAATGTTAGGATCACTTTATTCTGGACAGTTCTTTTTACTCTGACG
TCTGTGGTTGTACTTGTGATTACAACGGACTGGATCAGCTGGGACAAGCTGAATCGGGGATTTTTGCCCA
GTGATGAAGTTTCCAGAGCATTCCTTGCTTCTTTTATCTTGGTCTTTGACCTTCTTATTGTGATGCAGGC
AAATGGTTTAACTATGGAATTATCTTCCTCGTCTTGA

Translation (268 aa):
MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPRGVGWRILKVL
LWLLAILTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFFSTILFLFIFSHIYNTILLMDGNMGAYI
ITDYMGIRNESFMKLAAVGTWMGDFVTAWMVTDMMLQDKPYPDWGKSARAFWKKGNVRITLFWTVLFTLT
SVVVLVITTDWISWDKLNRGFLPSDEVSRAFLASFILVFDLLIVMQANGLTMELSSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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