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Report for CCDS73469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73469.1 Public Homo sapiens 12 LETMD1 24 110 108 CCDS HistoryNCBI Gene:25875Re-query CCDS DB by CCDS ID:73469.1Re-query CCDS DB by GeneID:25875See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73469.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547008.5 ENSP00000447419.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547008.5Link to Ensembl Protein Viewer:ENSP00000447419.1Re-query CCDS DB by Nucleotide ID:ENST00000547008Re-query CCDS DB by Protein ID:ENSP00000447419
Original member Current member NCBI NM_001300765.2 NP_001287694.1 Accepted alive Link to Nucleotide Sequence:NM_001300765.2Link to Protein Sequence:NP_001287694.1Re-query CCDS DB by Nucleotide ID:NM_001300765Re-query CCDS DB by Protein ID:NP_001287694Link to BLAST:NP_001287694.1

Chromosomal Locations for CCDS 73469.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51048357 51048478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51049034 51049185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51052092 51052207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51056350 51056502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51058032 51058128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51059361 51059431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGCTCTCCAGGGTGTGCTGGGCTCGGTCGGCTGTGTGGGGCTCGGCAGTCACCCCTGGACATTTTG
TCACCCGGAGGCTGCAACTTGGTCGCTCTGGCCTGGCTTGGGGGGCCCCTCGGTCTTCAAAGCTTCACCT
TTCTCCAAAGGCAGATGTGAAGAACTTGATGTCTTATGTGGTAACCAAGACAAAAGCGATTAATGGGAAA
TACCATCGTTTCTTGGGTCGTCATTTCCCCCGCTTCTATGTCCTGTACACAATCTTCATGAAAGGATTGC
AGATGTTATGGGCTGATGCCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATATAAAGTT
TCATCAACTTCCATACCGGGAGATGGAGCATTTGAGACAGAAAGCCTTGAGCCGGGCCATGCTTCTCACA
TCTTACCTGCCTCCTCCCTTGTTGAGACATCGTTTGAAGACTCATACAACTGTGATTCACCAACTGGACA
AGGCTTTGGCAAAGCTGGGGATTGGCCAGCTGACTGCTCAGGAAGTAAAATCGGCTTGTTATCTCCGTGG
CCTGAATTCTACGCATATTGGTGAAGATAGGTGTCGAACTTGGCTGGGAGAATGGCTGCAGATTTCCTGC
AGCCTGAAAGAAGCTGAGCTGTCTCTCTTGCTGCACAACGTGGTCCTGCTCTCCACCAACTACCTTGGGA
CAAGGCGCTGA

Translation (236 aa):
MALSRVCWARSAVWGSAVTPGHFVTRRLQLGRSGLAWGAPRSSKLHLSPKADVKNLMSYVVTKTKAINGK
YHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIKFHQLPYREMEHLRQKALSRAMLLT
SYLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISC
SLKEAELSLLLHNVVLLSTNYLGTRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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