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Report for CCDS73572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73572.1 Public Homo sapiens 13 RCBTB2 24 110 108 CCDS HistoryNCBI Gene:1102Re-query CCDS DB by CCDS ID:73572.1Re-query CCDS DB by GeneID:1102See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430805.6 ENSP00000389910.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430805.6Link to Ensembl Protein Viewer:ENSP00000389910.2Re-query CCDS DB by Nucleotide ID:ENST00000430805Re-query CCDS DB by Protein ID:ENSP00000389910
Original member Current member NCBI NM_001286830.2 NP_001273759.1 Accepted alive Link to Nucleotide Sequence:NM_001286830.2Link to Protein Sequence:NP_001273759.1Re-query CCDS DB by Nucleotide ID:NM_001286830Re-query CCDS DB by Protein ID:NP_001273759Link to BLAST:NP_001273759.1

Chromosomal Locations for CCDS 73572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48490111 48490251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48496191 48496321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48499621 48499760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48501742 48501868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48502724 48502914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48510629 48510771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48511770 48511877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512016 48512174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512729 48512895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515205 48515355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515586 48515741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48522308 48522364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGTCCGCTCTTCCCCGTGATTTGGAACTTTCCAATCCCAGAGAAAAGTTGACAAAGCCAGTACAGGCTA
CTCTGTCATCTTTGAAGATGTTAGATGTGGGAAAGTGGCCAATTTTTTCCCTTTGTTCTGAAGAAGAACT
ACAGTTAATTCGTCAGGCTTGTGTCTTTGGCAGTGCTGGCAATGAAGTTTTATACACTACAGTAAATGAT
GAGATTTTTGTGCTTGGCACAAACTGCTGTGGCTGTTTGGGGTTAGGTGACGTCCAGAGCACCATTGAAC
CTCGGAGACTGGATTCTTTAAATGGCAAAAAAATAGCCTGCCTCAGCTATGGGAGTGGTCCACATATTGT
CCTTGCAACAACAGAAGGAGAAGTCTTTACCTGGGGTCATAATGCTTATAGCCAGCTGGGCAATGGGACA
ACTAATCATGGTTTAGTGCCCTGTCATATCTCTACTAATCTGTCAAACAAACAAGTCATTGAAGTTGCCT
GTGGGTCTTACCATTCTTTGGTGCTAACATCTGATGGAGAGGTATTTGCCTGGGGTTATAATAACTCTGG
GCAGGTAGGATCTGGATCAACAGTTAATCAGCCAATCCCTCGAAGAGTCACTGGCTGCCTACAAAATAAA
GTAGTTGTGACCATAGCATGTGGGCAGATGTGCTGCATGGCAGTAGTAGACACGGGGGAGGTCTATGTCT
GGGGTTACAACGGAAACGGGCAGCTTGGACTCGGCAACAGTGGCAACCAGCCAACCCCTTGCAGAGTGGC
AGCTTTGCAAGGCATCCGTGTCCAGAGGGTCGCCTGTGGCTACGCACACACATTAGTATTAACAGATGAA
GGCCAAGTGTATGCTTGGGGCGCCAATTCTTATGGGCAGTTGGGCACTGGCAATAAAAGCAACCAGTCCT
ATCCTACTCCTGTCACTGTGGAAAAGGACAGGATTATCGAGATTGCAGCCTGTCACTCCACACACACGTC
TGCGGCCAAGACGCAGGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCG
CACCTCACCCACTTCTCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCC
TCCTCTCCGTGGAACCTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGA
CACTGCAGACCTGAAGTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCGA
TGTGAGCATTTTCGTTCGTCATTGGAAGATAACGAGGATGATATTGTAGAAATGAGTGAATTTTCATATC
CTGTTTACCGGGCCTTCCTGGAATACCTATACACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAGG
ACTGCTAGACTTGGCTACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAA
GGCATCTGCGAGGAGAATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAGGATTTAGAAG
AATTCTGCTTCAGGTTTTGCATAAACCATCTGACTGTAGTAACACAAACATCAGGTTTTGCAGAAATGGA
CCATGATCTCCTGAAGAACTTTATCAGCAAAGCAAGCAGAGTTGGAGCCTTTAAAAATTGA

Translation (556 aa):
MSALPRDLELSNPREKLTKPVQATLSSLKMLDVGKWPIFSLCSEEELQLIRQACVFGSAGNEVLYTTVND
EIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGT
TNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK
VVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDE
GQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILP
HLTHFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIR
CEHFRSSLEDNEDDIVEMSEFSYPVYRAFLEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQ
GICEENAIALLSAAVKYDAQDLEEFCFRFCINHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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