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Report for CCDS73809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73809.1 Public Homo sapiens 16 E4F1 24 110 108 CCDS HistoryNCBI Gene:1877Re-query CCDS DB by CCDS ID:73809.1Re-query CCDS DB by GeneID:1877See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000565090.5 ENSP00000456760.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565090.5Link to Ensembl Protein Viewer:ENSP00000456760.1Re-query CCDS DB by Nucleotide ID:ENST00000565090Re-query CCDS DB by Protein ID:ENSP00000456760
Original member Current member NCBI NM_001288778.2 NP_001275707.2 Accepted alive Link to Nucleotide Sequence:NM_001288778.2Link to Protein Sequence:NP_001275707.2Re-query CCDS DB by Nucleotide ID:NM_001288778Re-query CCDS DB by Protein ID:NP_001275707Link to BLAST:NP_001275707.2

Chromosomal Locations for CCDS 73809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2223614 2223770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2228372 2228523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2229570 2229675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232171 2232364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232456 2232576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232756 2232908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2233011 2233183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2233438 2233500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2234640 2234781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2234859 2235001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2235081 2235143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2235216 2235572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGAGGGCGCGATGGCAGTGCGGGTGACGGCCGCTCATACGGCAGAAGCCCAGGCCGAAGCCGGGCGGG
AAGCGGGCGAGGGTGCAGTTGCGGCGGTGGCGGCGGCCTTGGCCCCCAGCGGCTTCCTCGGCCTCCCGGC
GCCCTTCAGCGAGGAAGATGAGGACGATGTGCACAGATGCGGCCGCTGCCAGGCAGAGTTCACCGCCTTG
GAGGATTTTGTTCAGCACAAGATTCAGAAGGCCTGCCAGCGGGCCCCTCCGGAGGCCCTGCCTGCCACCC
CTGCCACCACAGCGTTGCTGGGCCAGGAGGTGGTGCCGGCAGCACCAGGCCCAGAGGAGCCCATCACTGT
GGCCCACATCGTGGTGGAGGCGGCCTCTCTGGCAGCAGACATCAGCCACGCATCTGACCTTGTTGGTGGT
GGGCACATCAAAGAGGTCATCGTGGCTGCTGAGGCGGAGCTGGGAGACGGTGAGATGGCCGAGGCCCCGG
GCAGCCCCCGCCAGCAGGGGCTGGGGCTCGCAGGGGAGGGTGAGCAGGCCCAGGTGAAGCTACTGGTGAA
CAAGGATGGCCGCTATGTGTGTGCGCTGTGCCACAAGACCTTCAAGACGGGCAGCATCCTCAAGGCCCAC
ATGGTCACTCACAGCAGCCGCAAGGACCACGAGTGCAAGCTCTGTGGGGCCTCCTTCCGCACCAAGGGCT
CACTCATCCGGCACCACCGGCGGCACACGGATGAGCGCCCCTACAAGTGCTCCAAGTGTGGAAAGAGCTT
CCGGGAGTCGGGTGCACTGACCCGGCACCTCAAGTCTCTCACCCCCTGCACAGAGAAAATCCGCTTCAGT
GTGAGCAAGGACGTGGTTGTCAGCAAAGAGGACGCACGTGCAGGTTCTGGAGCTGGAGCTGCCGGCTTGG
GGACAGCCACATCATCGGTGACAGGCGAGCCTATAGAGACTTCACCCGTGATTCACCTGGTGACAGATGC
CAAGGGCACCGTCATCCACGAAGTCCACGTCCAGATGCAGGAGCTGTCCCTGGGCATGAAAGCCCTGGCC
CCAGAGCCCCCCGTCTCCCAGGAGCTCCCCTGCTCCAGCGAGGGCAGCCGTGAGAACCTGCTGCACCAGT
TCTGCAGCCGTGGCTTCCGAGAGAAGGGCTCACTGGTGCGGCACGTGCGACACCACACAGGCGAGAAGCC
GTTCAAGTGCTACAAGTGCGGCCGTGGCTTCGCCGAGCACGGCACGCTGAACCGGCACCTGCGCACCAAA
GGGGGCTGCCTGCTGGAGGTGGAGGAGTTGCTGGTGTCTGAGGACAGCCCCGCGGCAGCCACCACCGTCC
TCACGGAAGACCCGCACACAGTGTTGGTGGAGTTCTCGTCCGTGGTAGCTGACACCCAGGAGTATATCAT
CGAGGCCACTGCGGACGATGCGGAGACCAGTGAGGCCACGGAGATCATCGAGGGCACCCAGACAGAGGTG
GACAGCCACATCATGAAGGTGGTGCAGCAGATCGTGCACCAGGCTAGCGCCGGCCACCAGATCATCGTGC
AGAACGTCACCATGGACGAGGAGACGGCGCTGGGCCCAGAGGCGGCTGCCGCCGACACCATCACCATCGC
CACCCCCGAGAGCCTGACAGAGCAGGTGGCCATGACGCTGGCCTCGGCCATCAGCGAGGGCACTGTGCTT
GCCGCCCGGGCAGGGACAAGTGGCACTGAACAGGCCACTGTGACCATGGTGTCATCAGAGGACATCGAGA
TCCTGGAGCATGCAGGCGAGCTGGTCATCGCCTCGCCGGAGGGCCAGCTGGAGGTGCAGACGGTCATCGT
CTAG

Translation (607 aa):
MEGAMAVRVTAAHTAEAQAEAGREAGEGAVAAVAAALAPSGFLGLPAPFSEEDEDDVHRCGRCQAEFTAL
EDFVQHKIQKACQRAPPEALPATPATTALLGQEVVPAAPGPEEPITVAHIVVEAASLAADISHASDLVGG
GHIKEVIVAAEAELGDGEMAEAPGSPRQQGLGLAGEGEQAQVKLLVNKDGRYVCALCHKTFKTGSILKAH
MVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCSKCGKSFRESGALTRHLKSLTPCTEKIRFS
VSKDVVVSKEDARAGSGAGAAGLGTATSSVTGEPIETSPVIHLVTDAKGTVIHEVHVQMQELSLGMKALA
PEPPVSQELPCSSEGSRENLLHQFCSRGFREKGSLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTK
GGCLLEVEELLVSEDSPAAATTVLTEDPHTVLVEFSSVVADTQEYIIEATADDAETSEATEIIEGTQTEV
DSHIMKVVQQIVHQASAGHQIIVQNVTMDEETALGPEAAAADTITIATPESLTEQVAMTLASAISEGTVL
AARAGTSGTEQATVTMVSSEDIEILEHAGELVIASPEGQLEVQTVIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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