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Report for CCDS74441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74441.1 Public Homo sapiens 19 VSTM1 24 110 108 CCDS HistoryNCBI Gene:284415Re-query CCDS DB by CCDS ID:74441.1Re-query CCDS DB by GeneID:284415See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366170.6 ENSP00000444153.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366170.6Link to Ensembl Protein Viewer:ENSP00000444153.2Re-query CCDS DB by Nucleotide ID:ENST00000366170Re-query CCDS DB by Protein ID:ENSP00000444153
Original member Current member NCBI NM_001288793.2 NP_001275722.1 Accepted alive Link to Nucleotide Sequence:NM_001288793.2Link to Protein Sequence:NP_001275722.1Re-query CCDS DB by Nucleotide ID:NM_001288793Re-query CCDS DB by Protein ID:NP_001275722Link to BLAST:NP_001275722.1

Chromosomal Locations for CCDS 74441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54040961 54041080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54041779 54041816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54041916 54041953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54042169 54042196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54042277 54042369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54063744 54063777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGACCGCAGAATTCCTCTCCCTGCTTTGCCTCGACACCAGAACCATCTTTGTCGCCATCTTCAGCTGCA
TCTCCATCCTTCTCCTCTTCCTCTCAGTCTTCATCATCTACAGATGCAGCCAGCACAGTTCATCATCTGA
GGAATCCACCAAGAGAACCAGCCATTCCAAACTTCCGGAGCAGGAGGCTGCCGAGGCAGATTTATCCAAT
ATGGAAAGGGTATCTCTCTCGACGGCAGACCCCCAAGGAGTGACCTATGCTGAGCTAAGCACCAGCGCCC
TGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCATGAATATGCGGCACTGAAAGTGTA
G

Translation (116 aa):
MTAEFLSLLCLDTRTIFVAIFSCISILLLFLSVFIIYRCSQHSSSSEESTKRTSHSKLPEQEAAEADLSN
MERVSLSTADPQGVTYAELSTSALSEAASDTTQEPPGSHEYAALKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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