NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS74845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74845.1 Public Homo sapiens 22 SMTN 24 110 108 CCDS HistoryNCBI Gene:6525Re-query CCDS DB by CCDS ID:74845.1Re-query CCDS DB by GeneID:6525See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619644.4 ENSP00000484398.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619644.4Link to Ensembl Protein Viewer:ENSP00000484398.1Re-query CCDS DB by Nucleotide ID:ENST00000619644Re-query CCDS DB by Protein ID:ENSP00000484398
Original member Current member NCBI NM_001207017.1 NP_001193946.1 Accepted alive Link to Nucleotide Sequence:NM_001207017.1Link to Protein Sequence:NP_001193946.1Re-query CCDS DB by Nucleotide ID:NM_001207017Re-query CCDS DB by Protein ID:NP_001193946Link to BLAST:NP_001193946.1

Chromosomal Locations for CCDS 74845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31082921 31083002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31083179 31083309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31087965 31088113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088513 31088606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088699 31088777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088872 31088969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31089699 31090019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090108 31090180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090808 31090879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090961 31091482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31091675 31091847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31093784 31093876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31095303 31095455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31095534 31095609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31096733 31096897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31096998 31097060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31097269 31097338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31098667 31098840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31099062 31099179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31099745 31099896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31104316 31104466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGAGAGTCCATCCCAGGCCACACAGCAGACTGGCGGCCAAGCTGGCAGGGCTGGAACCAGAGACCCCCT
ACCCTGGGTTTGAATTCTCTGAGCTGGTGACAGGTGCCACAGGCACTGGGGATCTCACCAGAAAGGAACC
GACGGAGCTAGGGGCCAGCGAGATGGCGGACGAGGCCTTAGCTGGGCTGGATGAGGGAGCCCTTCGGAAG
CTGCTGGAGGTCACAGCAGATCTGGCAGAGCGGCGGCGCATCCGCTCAGCCATCCGGGAACTGCAGCGGC
AGGAGCTGGAGCGCGAGGAGGAGGCCCTGGCATCCAAGCGTTTCCGTGCCGAGCGGCAGGACAACAAGGA
GAACTGGCTGCACTCTCAGCAGCGGGAAGCTGAGCAGCGGGCTGCCCTGGCACGGCTGGCAGGGCAGCTG
GAGTCCATGAACGATGTGGAGGAATTGACTGCACTGTTGCGAAGCGCTGGTGAGTATGAGGAGCGCAAGC
TGATCCGAGCTGCCATCCGCCGTGTACGGGCTCAGGAGATTGAGGCTGCCACCTTGGCTGGGAGGTTGTA
CAGCGGGCGTCCCAACAGTGGCTCAAGAGAGGACAGCAAGGGGCTAGCGGCACACAGGCTGGAACAGTGT
GAGGTGCCAGAGCGAGAGGAACAGGAACAGCAGGCAGAGGTTTCAAAGCCAACCCCCACCCCTGAAGGCA
CCAGCCAGGATGTGACCACAGTGACACTCCTGCTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGC
CTCACCCAGCAGTTCACCCACCCCTGCCTCTCCTGAGCCTCCATTGGAGCCTGCCGAGGCCCAGTGCCTT
ACAGCTGAGGTTCCAGGCAGCCCAGAGCCACCCCCCAGCCCACCCAAGACCACCAGCCCTGAGCCTCAGG
AGTCTCCAACGCTCCCCAGCACTGAGGGCCAGGTGGTCAACAAGCTTCTGTCTGGCCCCAAAGAGACCCC
TGCTGCCCAGAGCCCCACCAGAGGCCCCTCTGACACCAAGAGAGCAGACGTGGCTGGACCCCGACCCTGC
CAACGCTCCCTGTCGGTGCTCAGCCCCCGCCAACCAGCCCAGAACCGAGAGTCCACCCCCCTTGCCAGCG
GACCTTCCTCATTCCAGCGGGCTGGCTCTGTGCGGGATCGTGTCCACAAGTTCACATCTGATTCTCCTAT
GGCTGCTAGGCTCCAGGATGGCACACCCCAGGCTGCCCTAAGTCCCCTGACCCCCGCAAGGCTCCTGGGC
CCCTCCCTCACCAGCACCACCCCTGCCTCCTCCTCCAGCGGCTCCTCCTCTCGGGGCCCCAGTGATACCT
CCTCCCGGTTCAGCAAGGAGCAACGAGGAGTAGCCCAGCCCCTGGCCCAGCTTCGAAGCTGCCCCCAGGA
GGAGGGCCCCAGGGGGCGGGGCTTGGCTGCTAGGCCCCTTGAAAACAGAGCAGGGGGGCCTGTGGCACGT
TCAGAGGAGCCTGGTGCCCCGCTGCCCGTGGCCGTCGGCACTGCCGAGCCAGGGGGCAGTATGAAGACCA
CATTCACCATCGAGATCAAGGACGGCCGTGGCCAGGCCTCCACAGGCCGGGTGCTGCTGCCCACAGGCAA
CCAGAGGGCAGAACTGACACTGGGGCTGCGGGCGCCCCCGACCCTACTCAGCACCAGTAGTGGGGGCAAG
AGCACCATCACCCGTGTCAACAGCCCTGGGACCCTGGCTCGGCTGGGCAGTGTCACTCATGTCACCAGCT
TCAGCCATGCCCCCCCCAGTAGCCGAGGAGGCTGCAGCATCAAGGCTGCCGAGGATGCCGGGACCCCCGT
GGCCCACCCACCTGCCTTCAGCACCCGCCGCCGCTCCTCCACCGGCACCACCCGCAGCACTAGTCTCATG
GAAGCAGAGCCAGCAGAGCCTCTCGCTGCAGCAGTGGAAGCGGCCAATGGGGCTGAGCAGACCCGAGTGA
ACAAAGCACCAGAAGGGCGGAGCCCTCTGAGCGCTGAGGAGCTGATGACTATTGAGGATGAAGGAGTCTT
GGACAAGATGCTGGATCAGAGCACGGACTTTGAAGAGCGGAAGCTCATCCGGGCTGCACTTCGTGAGCTC
CGACAAAGGAAGAGAGACCAGCGGGACAAGGAGCGGGAACGGCGGCTGCAGGAGGCACGGGGCCGGCCAG
GGGAGGGGCGCGGCAACACAGCCACTGAGACCACCACGAGGCACAGCCAGCGGGCAGCTGATGGCTCTGC
TGTCAGCACTGTTACCAAGACTGAGCGGCTCGTCCACTCCAATGATGGCACACGGACGGCCCGCACCACC
ACAGTGGAGTCGAGTTTCGTGAGGCGCTCGGAGAATGGCAGTGGCAGCACCATGATGCAAACCAAGACCT
TCTCCTCTTCCTCCTCATCCAAGAAGATGGGCAGCATCTTCGACCGCGAGGACCAGGCCAGCCCACGGGC
CGGCAGCCTGGCGGCGCTCGAGAAACGGCAGGCCGAGAAGAAGAAAGAGCTGATGAAGGCGCAGAGTCTG
CCCAAGACCTCAGCCTCCCAGGCGCGCAAGGCCATGATTGAGAAGCTGGAGAAGGAGGGCGCGGCCGGCA
GCCCTGGCGGACCCCGCGCAGCCGTGCAGCGATCCACCAGCTTCGGGGTCCCCAACGCCAACAGCATCAA
GCAGATGCTGCTGGACTGGTGTCGAGCCAAGACTCGCGGCTACGAGCACGTCGACATCCAGAACTTCTCC
TCCAGCTGGAGTGATGGGATGGCCTTCTGTGCCCTGGTGCACAACTTCTTCCCTGAGGCCTTCGACTATG
GGCAGCTTAGCCCTCAGAACCGACGCCAGAACTTCGAGGTGGCCTTCTCATCTGCGGAGATGCTGGTGGA
CTGTGTGCCCCTGGTGGAGGTGGACGACATGATGATCATGGGCAAGAAGCCTGACCCCAAGTGTGTCTTC
ACCTATGTGCAGTCGCTCTACAACCACCTGCGACGCCACGAACTGCGCCTGCGCGGCAAGAATGTCTAG

Translation (1002 aa):
MRVHPRPHSRLAAKLAGLEPETPYPGFEFSELVTGATGTGDLTRKEPTELGASEMADEALAGLDEGALRK
LLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGQL
ESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLYSGRPNSGSREDSKGLAAHRLEQC
EVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCL
TAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPC
QRSLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDGTPQAALSPLTPARLLG
PSLTSTTPASSSSGSSSRGPSDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVAR
SEEPGAPLPVAVGTAEPGGSMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGK
STITRVNSPGTLARLGSVTHVTSFSHAPPSSRGGCSIKAAEDAGTPVAHPPAFSTRRRSSTGTTRSTSLM
EAEPAEPLAAAVEAANGAEQTRVNKAPEGRSPLSAEELMTIEDEGVLDKMLDQSTDFEERKLIRAALREL
RQRKRDQRDKERERRLQEARGRPGEGRGNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTRTARTT
TVESSFVRRSENGSGSTMMQTKTFSSSSSSKKMGSIFDREDQASPRAGSLAALEKRQAEKKKELMKAQSL
PKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFS
SSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAEMLVDCVPLVEVDDMMIMGKKPDPKCVF
TYVQSLYNHLRRHELRLRGKNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH