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Report for CCDS75157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75157.1 Public Homo sapiens 4 LIN54 24 110 108 CCDS HistoryNCBI Gene:132660Re-query CCDS DB by CCDS ID:75157.1Re-query CCDS DB by GeneID:132660See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75157.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506560.5 ENSP00000423475.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506560.5Link to Ensembl Protein Viewer:ENSP00000423475.1Re-query CCDS DB by Nucleotide ID:ENST00000506560Re-query CCDS DB by Protein ID:ENSP00000423475
Original member Current member NCBI NM_001288996.2 NP_001275925.1 Accepted alive Link to Nucleotide Sequence:NM_001288996.2Link to Protein Sequence:NP_001275925.1Re-query CCDS DB by Nucleotide ID:NM_001288996Re-query CCDS DB by Protein ID:NP_001275925Link to BLAST:NP_001275925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275925.1 660 Q6MZP7-2 660 100% 0 0

Chromosomal Locations for CCDS 75157.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 82928102 82928303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82930943 82931145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82935981 82936118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82936279 82936381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82937227 82937298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82938413 82938504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82939539 82939736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82939889 82939962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82946258 82946474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82984161 82984844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGAGGTGGTGCCAGCTGAGGTGAATAGTTTGCTTCCAGAGGAAATAATGGACACTGGTATAACTTTAG
TGGATGATGATAGTATTGAGGCTGTTATTGTTTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAAT
TGTCAACATAAATTCTACTGGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGT
AACCACACTAACCAAGTTGCAGTGAATACCACAATTACTAAAGCAGATTCTAATACCACAGTGAAACCAG
CTTTTCCAAGTGGCCTTCAAAAACTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTT
AAACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAGTTA
ATTTTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACTACCCCAGG
CTCAGAAAGTTACAACTCAGGCCCAGTCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTAC
CATTGGAGGGAGGCCAGAGGTGAAACCTGTCATTGGTGTCTCAGCATTGACCCCAGGAAGTCAACTGATT
AATACTACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTACAGGCAGTGAAATCAACTG
TGCAGACCATCACTGTTGGAGGAGTGAGCACATCACAGTTTAAGACAATTATTCCTCTGGCAACTGCTCC
CAATGTCCAGCAGATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTTGTTACTGCCACATCAGCC
AGTAGCTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTCAGCCTCTTCAGCAAGCAAAGCCAG
TGGTTGTTAATACAACCCCAGTGCGGATGTCAGTTCCAATTGTCTCAGCTCAGGCTGTCAAACAAGTTGT
TCCAAAACCAATCAATCCAACTTCACAAATAGTAACTACTAGCCAGCCACAGCAACGGCTTATCATGCCT
GCCACACCACTGCCACAGATCCAGCCCAACCTCACTAACCTGCCACCAGGCACTGTCCTGGCACCAGCTC
CGGGAACAGGGAATGTGGGTTATGCAGTGCTTCCAGCTCAGTATGTTACTCAGCTACAGCAGTCTTCATA
TGTATCAATAGCAAGCAACTCTACCTTTACTGGAACATCTGGTATCCAGACCCAGGCACGGCTTCCATTC
AATGGCATAATCCCATCAGAGTCGGCCAGTCGGCCCCGAAAGCCCTGTAATTGTACAAAATCACTGTGTT
TGAAATTGTATTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTACAA
CAATTTGGAACATGAAAATGAAAGGCAAAAAGCAATAAAGGCATGCCTTGACAGAAATCCAGAAGCCTTT
AAGCCTAAGATAGGGAAAGGAAAGGAGGGAGAATCTGATCGACGTCATAGCAAAGGGTGTAATTGCAAAC
GATCAGGATGTCTTAAAAACTACTGTGAATGCTATGAGGCAAAAATAATGTGTTCCTCAATATGCAAATG
TATTGGCTGTAAGAATTTTGAAGAAAGCCCGGAAAGGAAGACATTGATGCATTTGGCAGATGCAGCTGAA
GTAAGGGTACAGCAACAAACAGCAGCCAAGACGAAGTTATCCTCTCAAATTTCAGACTTGCTTACTAGGC
CAACACCAGCTTTAAATAGTGGAGGCGGAAAATTGCCATTTACATTTGTAACTAAGGAAGTAGCTGAAGC
CACATGTAATTGCCTCCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGAAAATCAAAGGCAGCAGCGGAA
CGGATGATACTTGAGGAATTCGGACGATGTTTGATGAGTGTCATCAACTCTGCAGGAAAGGCAAAAAGTG
ACCCTTGTGCCATGAATTGCTAA

Translation (660 aa):
MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYS
NHTNQVAVNTTITKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKL
ILTTLGKSGSPIVLALPHSQLPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLI
NTTTQPSVLQTQQLKTVQAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATSA
SSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMP
ATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSTFTGTSGIQTQARLPF
NGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF
KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAE
VRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAE
RMILEEFGRCLMSVINSAGKAKSDPCAMNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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