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Report for CCDS75258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75258.1 Public Homo sapiens 5 PTCD2 24 110 108 CCDS HistoryNCBI Gene:79810Re-query CCDS DB by CCDS ID:75258.1Re-query CCDS DB by GeneID:79810See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543322.5 ENSP00000438810.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543322.5Link to Ensembl Protein Viewer:ENSP00000438810.2Re-query CCDS DB by Nucleotide ID:ENST00000543322Re-query CCDS DB by Protein ID:ENSP00000438810
Original member Current member NCBI NM_001284405.2 NP_001271334.1 Accepted alive Link to Nucleotide Sequence:NM_001284405.2Link to Protein Sequence:NP_001271334.1Re-query CCDS DB by Nucleotide ID:NM_001284405Re-query CCDS DB by Protein ID:NP_001271334Link to BLAST:NP_001271334.1

Chromosomal Locations for CCDS 75258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72335817 72335885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72338622 72338735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72342962 72343036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72352641 72352754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72358203 72358427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGA
ATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGAGAAATTCTCTC
CAGGAGAGCATCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTGTGTCCATT
TTTTCTCAAATCATGAATCCAGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCATATCCAGTCAA
ATATGTTGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAAAAG
ACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAAAAAGTGAAGGATGTGCCTGCCCTTGTGGCC
AAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCACTGATTCTTTGGATGCTGTGC
TCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCAGCCGTCGCAC
CTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA

Translation (198 aa):
MKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSI
FSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVKDVPALVA
KFDEIYGTLHITGQVTTDSLDAVLCHTPRDRKSHTLLLNKRMVSRRTFQPLSQSLLAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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