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Report for CCDS75287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75287.1 Public Homo sapiens 5 TRIM36 24 110 108 CCDS HistoryNCBI Gene:55521Re-query CCDS DB by CCDS ID:75287.1Re-query CCDS DB by GeneID:55521See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513154.6 ENSP00000423934.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000513154.6Link to Ensembl Protein Viewer:ENSP00000423934.1Re-query CCDS DB by Nucleotide ID:ENST00000513154Re-query CCDS DB by Protein ID:ENSP00000423934
Original member Current member NCBI NM_001300759.2 NP_001287688.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001300759.2Link to Protein Sequence:NP_001287688.1Re-query CCDS DB by Nucleotide ID:NM_001300759Re-query CCDS DB by Protein ID:NP_001287688Link to BLAST:NP_001287688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287688.1 716 Q9NQ86-4 716 100% 0 0

Chromosomal Locations for CCDS 75287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115126503 115126857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115130592 115130889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115133860 115134147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137000 115137124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137363 115137616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115141279 115141374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115144598 115144744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115147069 115147394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115163518 115163752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115169608 115169634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGAGGGCGATGGCTCAGATTCGCCGGTTACCATTAAGAATATCGAAAGGGAGCTCATTTGCCCAGCAT
GCAAGGAGCTGTTTACCCACCCATTGATTCTCCCTTGCCAACATAGTATCTGTCATAAATGTGTAAAAGA
ACTCCTGCTGACTCTCGATGATTCATTCAACGATGTGGGATCAGACAACTCCAATCAAAGCAGTCCTCGA
CTTCGGCTCCCCTCCCCTAGTATGGATAAAATTGACCGAATTAACAGACCAGGCTGGAAGCGCAATTCAT
TGACCCCGAGGACAACTGTTTTCCCTTGCCCTGGCTGTGAGCATGATGTGGATCTTGGAGAACGAGGAAT
CAATGGTCTGTTTCGAAACTTCACTTTGGAAACTATTGTGGAAAGATATCGTCAAGCAGCTAGGGCAGCC
ACAGCCATTATGTGTGACCTTTGTAAACCACCACCTCAAGAATCCACAAAAAGCTGCATGGACTGTAGTG
CAAGTTACTGCAATGAATGCTTCAAAATTCATCACCCTTGGGGTACTATAAAAGCTCAACATGAGTATGT
TGGTCCAACTACTAACTTCAGACCCAAGATTTTAATGTGCCCAGAACATGAAACAGAGAGAATAAACATG
TACTGTGAATTATGTAGGAGGCCAGTTTGCCATCTGTGTAAGTTGGGTGGTAATCATGCCAACCACCGTG
TAACCACTATGAGCAGTGCCTACAAAACCTTAAAGGAAAAGCTTTCAAAGGATATTGATTACCTTATTGG
TAAGGAAAGCCAGGTGAAGAGTCAAATATCTGAACTAAACTTGTTAATGAAAGAAACAGAGTGTAATGGA
GAGAGGGCTAAAGAAGAAGCAATTACACATTTTGAAAAGCTCTTTGAAGTTCTGGAAGAGAGGAAATCAT
CTGTTTTGAAAGCAATTGACTCCTCTAAGAAACTAAGATTAGACAAATTTCAGACTCAAATGGAAGAGTA
CCAGGGACTTCTAGAGAACAATGGACTTGTGGGATATGCTCAAGAAGTGCTAAAGGAGACAGATCAGTCT
TGCTTTGTGCAGACAGCAAAGCAGCTCCACCTCAGAATACAGAAAGCCACAGAATCTTTGAAGAGCTTTA
GACCTGCAGCTCAGACTTCTTTTGAAGACTATGTTGTTAATACCTCTAAACAAACAGAACTTCTTGGAGA
ATTATCCTTTTTCTCTAGTGGCATAGACGTGCCAGAGATCAATGAGGAACAGAGCAAAGTTTATAACAAT
GCCTTGATAAATTGGCACCATCCAGAAAAGGATAAAGCTGATAGCTATGTTCTTGAATATCGGAAAATCA
ATAGAGATGATGAAATGTCATGGAATGAGATAGAAGTGTGTGGAACAAGTAAAATAATTCAAGACTTGGA
AAACAGTAGTACCTATGCTTTCAGAGTAAGAGCTTACAAGGGTTCAATCTGTAGTCCTTGCAGCAGAGAA
TTGATTCTTCATACTCCTCCAGCTCCAGTTTTCAGCTTCCTCTTTGATGAAAAATGTGGCTATAATAATG
AACACCTCCTGCTGAACTTGAAGAGAGACCGTGTAGAGAGTAGAGCTGGATTTAATCTTCTGCTTGCTGC
AGAACGCATCCAAGTGGGTTATTACACAAGCTTAGACTACATCATTGGAGATACTGGCATTACAAAAGGA
AAACACTTCTGGGCCTTCCGTGTGGAACCATATTCATACCTGGTAAAAGTGGGAGTTGCTTCTAGCGATA
AACTACAAGAATGGCTCCGTTCTCCCCGGGATGCAGTTAGTCCAAGATATGAGCAAGACAGTGGGCATGA
CAGTGGAAGTGAGGATGCCTGTTTTGATTCTTCACAACCATTTACCTTAGTTACTATAGGCATGCAGAAA
TTTTTTATACCCAAGTCACCTACTTCTTCTAATGAACCTGAAAATAGAGTTCTCCCTATGCCAACAAGTA
TTGGGATTTTCCTTGACTGTGATAAAGGCAAAGTAGATTTCTATGATATGGATCAGATGAAATGCCTTTA
TGAACGCCAAGTGGACTGTTCACATACACTGTATCCAGCATTTGCATTAATGGGCAGTGGAGGAATTCAG
CTTGAAGAACCCATCACAGCAAAATATCTGGAATACCAAGAGGACATGTAG

Translation (716 aa):
MEGDGSDSPVTIKNIERELICPACKELFTHPLILPCQHSICHKCVKELLLTLDDSFNDVGSDNSNQSSPR
LRLPSPSMDKIDRINRPGWKRNSLTPRTTVFPCPGCEHDVDLGERGINGLFRNFTLETIVERYRQAARAA
TAIMCDLCKPPPQESTKSCMDCSASYCNECFKIHHPWGTIKAQHEYVGPTTNFRPKILMCPEHETERINM
YCELCRRPVCHLCKLGGNHANHRVTTMSSAYKTLKEKLSKDIDYLIGKESQVKSQISELNLLMKETECNG
ERAKEEAITHFEKLFEVLEERKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLENNGLVGYAQEVLKETDQS
CFVQTAKQLHLRIQKATESLKSFRPAAQTSFEDYVVNTSKQTELLGELSFFSSGIDVPEINEEQSKVYNN
ALINWHHPEKDKADSYVLEYRKINRDDEMSWNEIEVCGTSKIIQDLENSSTYAFRVRAYKGSICSPCSRE
LILHTPPAPVFSFLFDEKCGYNNEHLLLNLKRDRVESRAGFNLLLAAERIQVGYYTSLDYIIGDTGITKG
KHFWAFRVEPYSYLVKVGVASSDKLQEWLRSPRDAVSPRYEQDSGHDSGSEDACFDSSQPFTLVTIGMQK
FFIPKSPTSSNEPENRVLPMPTSIGIFLDCDKGKVDFYDMDQMKCLYERQVDCSHTLYPAFALMGSGGIQ
LEEPITAKYLEYQEDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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