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Report for CCDS75320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75320.1 Public Homo sapiens 5 TMCO6 24 110 108 CCDS HistoryNCBI Gene:55374Re-query CCDS DB by CCDS ID:75320.1Re-query CCDS DB by GeneID:55374See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252100.6 ENSP00000252100.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252100.6Link to Ensembl Protein Viewer:ENSP00000252100.6Re-query CCDS DB by Nucleotide ID:ENST00000252100Re-query CCDS DB by Protein ID:ENSP00000252100
Original member Current member NCBI NM_001300980.2 NP_001287909.1 Accepted alive Link to Nucleotide Sequence:NM_001300980.2Link to Protein Sequence:NP_001287909.1Re-query CCDS DB by Nucleotide ID:NM_001300980Re-query CCDS DB by Protein ID:NP_001287909Link to BLAST:NP_001287909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287909.1 499 Q96DC7-2 499 100% 0 0

Chromosomal Locations for CCDS 75320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140639528 140639612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140639739 140639851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140641665 140641780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140641870 140642053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642315 140642419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642586 140642671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140642907 140643041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140643564 140643675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140643780 140643966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644100 140644194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644573 140644740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140644985 140645098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTGGAGCCGACGGCAGGGCCGCCTCAGGCCCACGGTCTGCGGGGTGGAGGAGCTACGGCGCCGCCGGC
GG
GAGCGGGAGGCAGCACTGCGGAAGGCGCGGAGGGAGCAGCAGCTGGTCAGCAAGAGGCTGCTGAGAAA
C
GACGCCCCAGAGGAAGCTGGAGAGGGATGTGTGGCTGCGATCCTCGGGGAAACCGAGGTGCAGCAGTTC
CTG
CGGCAAGCCCAGCGGGGGACAGAGGAAAAGGAGAGAGAGGGGGCTCTGGTCAGCCTTCGTCGAGGCT
TG
CAGCACCCTGAAACACAGCAAACCTTCATCCGGCTGGAGGGCAGCATGCGGACCCTGGTCGGGCTCCT
G
ACCAGCAACCAGGCCCTGCTGCAGCTTGAGGCGGCTCGGTGCCTGCATGAGCTCTCTCACTCCGAGCAG
TCC
ACTGTTGCTGAGGCCTGCCTGCCAGCCACTTCTTACCTCCTCACCTACCTCTCCAGTCACAGCTCAG
AC
TTCATAGAGCTGTGTCTGTATACACTGGGTAACCTGATCGTGGAGAGTGAGGCTGTGAGAAGGCAGCT
C
CTGCCACAGGGCATTGTTCCAGCCTTGGCTGCCTGCATCCAGTCCCCCCATGTGGCTGTGCTGGAAGCT
CTC
GGATATGCCTTGTCCCAGCTTCTACAGGCTGAGGAAGCTCCAGAGAAGATCATTCCCCCTGCTTCTG
CC
AGCAGCTCCATCTTGGCCTCCACTCTCCCTCAGCACATGCTACAAATGTTGCAACCTGGCCCAAAGCT
C
AACCCTGGGGTCGCTGTGGAGTTTGCCTGGTGCCTTCATTACATCATCTGCAGCCAGGTCAGCAATCCT
CTG
CTCATTGGCCATGGGGCTCTGTCTACTCTGGGGTTGCTGCTGTTGGACTTGGCTGGGGCTGTCCAGA
AA
ACCGAGGATGCAGGACTGGAGCTGCTGGCATGCCCCGTGCTTCGATGTCTAAGCAACCTGCTAACTGA
G
GCAGCAGTGGAGACTGTGGGAGGGCAAATGCAGCTCAGAGATGAGCGTGTTGTGGCAGCCTTATTTATC
CTT
CTGCAGTTCTTTTTCCAGAAACAGCCCAGTCTGCTCCCTGAGGGCCTTTGGCTCCTCAACAACCTCA
CT
GCAAACAGTCCTAGTTTCTGTACCTCCTTGCTCTCCCTGGATCTGATTGAGCCTCTCTTACAGCTGTT
G
CCAGTATCTAACGTGGTGAGCGTAATGGTGCTCACAGTTCTGTGCAATGTTGCAGAAAAGGGTCCTGCT
TAC
TGCCAGCGGCTGTGGCCAGGGCCCCTGCTTCCCGCCTTGCTGCACACACTAGCCTTTTCTGACACTG
AA
GTAGTAGGCCAGAGTTTGGAGCTGCTGCATCTGCTGTTCCTGTATCAGCCAGAGGCTGTTCAGGTCTT
C
CTGCAGCAGTCAGGGCTGCAAGCCCTGGAAAGGCATCAGGAAGAGGCCCAGCTCCAGGATCGTGTGTAT
GCT
CTCCAGCAGACAGCTCTTCAAGGGTGA


Translation (499 aa):
MWSRRQGRLRPTVCGVEELRRRRREREAALRKARREQQLVSKRLLRNDAPEEAGEGCVAAILGETEVQQF
L
RQAQRGTEEKEREGALVSLRRGLQHPETQQTFI
RLEGSMRTLVGLLTSNQALLQLEAARCLHELSHSEQ
S
TVAEACLPATSYLLTYLSSHSSDFI
ELCLYTLGNLIVESEAVRRQLLPQGIVPALAACIQSPHVAVLEA
L
GYALSQLLQAEEAPEKII
PPASASSSILASTLPQHMLQMLQPGPKLNPGVAVEFAWCLHYIICSQVSNP
L
LIGHGALSTLGLLLLDLAGAVQKTEDAGLEL
LACPVLRCLSNLLTEAAVETVGGQMQLRDERVVAALFI
L
LQFFFQKQPSLLPEGLWLLNNLT
ANSPSFCTSLLSLDLIEPLLQLLPVSNVVSVMVLTVLCNVAEKGPA
Y
CQRLWPGPLLPALLHTLAFSDTEVVGQSLELLHLLFLYQPE
AVQVFLQQSGLQALERHQEEAQLQDRVY
A
LQQTALQG




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser