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Report for CCDS75401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75401.1 Public Homo sapiens 6 PHACTR1 24 110 108 CCDS HistoryNCBI Gene:221692Re-query CCDS DB by CCDS ID:75401.1Re-query CCDS DB by GeneID:221692See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332995.12 ENSP00000329880.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332995.12Link to Ensembl Protein Viewer:ENSP00000329880.8Re-query CCDS DB by Nucleotide ID:ENST00000332995Re-query CCDS DB by Protein ID:ENSP00000329880
Original member Current member EBI ENST00000674637.1 ENSP00000501634.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674637.1Link to Ensembl Protein Viewer:ENSP00000501634.1Re-query CCDS DB by Nucleotide ID:ENST00000674637Re-query CCDS DB by Protein ID:ENSP00000501634
Original member Current member EBI ENST00000676159.1 ENSP00000501921.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676159.1Link to Ensembl Protein Viewer:ENSP00000501921.1Re-query CCDS DB by Nucleotide ID:ENST00000676159Re-query CCDS DB by Protein ID:ENSP00000501921
Original member Current member NCBI NM_001242648.4 NP_001229577.1 Accepted alive Link to Nucleotide Sequence:NM_001242648.4Link to Protein Sequence:NP_001229577.1Re-query CCDS DB by Nucleotide ID:NM_001242648Re-query CCDS DB by Protein ID:NP_001229577Link to BLAST:NP_001229577.1
Original member Current member NCBI NM_001322308.3 NP_001309237.1 Accepted alive Link to Nucleotide Sequence:NM_001322308.3Link to Protein Sequence:NP_001309237.1Re-query CCDS DB by Nucleotide ID:NM_001322308Re-query CCDS DB by Protein ID:NP_001309237Link to BLAST:NP_001309237.1
Original member Current member NCBI NM_001322309.3 NP_001309238.1 Accepted alive Link to Nucleotide Sequence:NM_001322309.3Link to Protein Sequence:NP_001309238.1Re-query CCDS DB by Nucleotide ID:NM_001322309Re-query CCDS DB by Protein ID:NP_001309238Link to BLAST:NP_001309238.1
Original member Current member NCBI NM_030948.6 NP_112210.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030948.6Link to Protein Sequence:NP_112210.1Re-query CCDS DB by Nucleotide ID:NM_030948Re-query CCDS DB by Protein ID:NP_112210Link to BLAST:NP_112210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229577.1 580 Q9C0D0-1 580 100% 0 0
NP_001309237.1 580 Q9C0D0-1 580 100% 0 0
NP_001309238.1 580 Q9C0D0-1 580 100% 0 0
NP_112210.1 580 Q9C0D0-1 580 100% 0 0

Chromosomal Locations for CCDS 75401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 12718745 12718847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12749644 12749790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13053365 13053529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13160204 13160284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13182519 13182686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13205815 13206136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13227816 13228063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13230037 13230193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13272860 13272915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13278268 13278329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13283422 13283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13286146 13286222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13287063 13287078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGATTATCCCAAAATGGATTATTTTCTGGATGTAGAGTCTGCTCACAGACTCTTGGATGTTGAGTCAG
CTCAAAGATTCTTCTACAGTCAAGGAGCTCAAGCTCGCCGGGCGACCCTGCTCCTGCCTCCCACATTAAT
GGCGGCATCCTCGGAGGATGATATAGACCGGCGGCCCATCCGGAGAGTGCGCTCCAAGAGCGACACGCCG
TACCTCGCAGAGGCCAGGATCTCCTTTAACCTGGGGGCAGCTGAGGAAGTGGAGAGGCTGGCGGCGATGC
GTTCTGACTCCCTCGTCCCAGGCACCCACACCCCACCCATCCGCAGGAGAAGTAAGTTTGCCAACCTGGG
AAGGATTTTCAAGCCTTGGAAATGGAGGAAGAAGAAAAGCGAAAAGTTCAAACACACGTCAGCAGCCCTG
GAAAGGAAAATATCTATGAGGCAAAGCAGAGAAGAGCTGATAAAGCGAGGAGTCCTGAAGGAAATCTATG
ATAAAGATGGGGAACTCTCTATATCCAATGAAGAGGACTCCCTAGAAAATGGGCAGTCCCTGAGCTCCAG
CCAGCTGTCTCTGCCTGCCCTGTCCGAAATGGAGCCAGTCCCAATGCCCAGGGATCCCTGCTCATATGAG
GTGCTCCAACCGTCAGACATCATGGATGGGCCAGATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCAG
TGAAACTGTCGCCTCCGCTACCTCCAAAGAAAGTCATGATCTGTATGCCCGTGGGGGGGCCAGACCTCTC
ACTGGTGTCCTACACAGCCCAGAAGAGTGGCCAGCAGGGTGTGGCCCAGCACCACCACACTGTCCTGCCC
TCCCAGATCCAGCACCAGCTGCAGTACGGCAGCCACGGCCAGCACCTCCCCTCCACCACCGGCTCCCTCC
CCATGCACCCCTCGGGCTGCAGAATGATAGACGAGCTCAACAAAACGCTGGCCATGACCATGCAGAGGCT
GGAAAGCTCTGAGCAGCGGGTCCCCTGTTCCACTTCTTACCACAGCTCTGGGTTGCACTCGGGTGATGGG
GTCACCAAAGCAGGACCTATGGGCCTTCCAGAAATAAGACAAGTGCCAACTGTTGTGATTGAATGTGATG
ACAATAAAGAAAATGTGCCTCATGAGTCAGACTACGAAGACTCTTCTTGCCTGTATACAAGAGAAGAGGA
GGAAGAGGAGGAGGACGAAGACGACGACAGCTCATTATACACCAGCTCCCTGGCCATGAAGGTCTGCAGG
AAGGACTCCTTAGCCATCAAACTCAGCAACAGGCCCTCCAAGCGAGAGCTGGAAGAAAAGAACATCCTTC
CCAGGCAGACGGATGAGGAGCGGCTGGAGCTGAGGCAACAGATTGGCACCAAGCTCACCAGGCGGCTGAG
CCAGAGGCCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAACCTCGGAATGAACAAGAGGAACAG
GAGGAGAAGAGAGAGATCAAGAGGAGGCTAACCCGAAAGCTCAGTCAAAGGCCCACGGTGGAAGAGCTTC
GGGAAAGAAAGATCCTCATCCGCTTCAGTGACTACGTGGAGGTGGCTGACGCTCAGGACTATGACCGCAG
GGCAGATAAGCCGTGGACCCGCCTCACCGCTGCAGACAAAGCTGCCATCCGAAAGGAGCTCAATGAATTC
AAAAGCACTGAGATGGAAGTTCATGAATTGAGTAGACACTTAACAAGGTTTCACCGACCTTAA

Translation (580 aa):
MDYPKMDYFLDVESAHRLLDVESAQRFFYSQGAQARRATLLLPPTLMAASSEDDIDRRPIRRVRSKSDTP
YLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAAL
ERKISMRQSREELIKRGVLKEIYDKDGELSISNEEDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYE
VLQPSDIMDGPDPGAPVKLPCLPVKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGVAQHHHTVLP
SQIQHQLQYGSHGQHLPSTTGSLPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSGDG
VTKAGPMGLPEIRQVPTVVIECDDNKENVPHESDYEDSSCLYTREEEEEEEDEDDDSSLYTSSLAMKVCR
KDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQ
EEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEF
KSTEMEVHELSRHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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