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Report for CCDS75477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75477.1 Public Homo sapiens 6 PRIM2 24 110 108 CCDS HistoryNCBI Gene:5558Re-query CCDS DB by CCDS ID:75477.1Re-query CCDS DB by GeneID:5558See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370687.6 ENSP00000483201.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370687.6Link to Ensembl Protein Viewer:ENSP00000483201.1Re-query CCDS DB by Nucleotide ID:ENST00000370687Re-query CCDS DB by Protein ID:ENSP00000483201
Original member Current member EBI ENST00000274891.10 ENSP00000485304.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000274891.10Link to Ensembl Protein Viewer:ENSP00000485304.1Re-query CCDS DB by Nucleotide ID:ENST00000274891Re-query CCDS DB by Protein ID:ENSP00000485304
Original member Current member NCBI NM_001282487.2 NP_001269416.1 Accepted alive Link to Nucleotide Sequence:NM_001282487.2Link to Protein Sequence:NP_001269416.1Re-query CCDS DB by Nucleotide ID:NM_001282487Re-query CCDS DB by Protein ID:NP_001269416Link to BLAST:NP_001269416.1
Original member Current member NCBI NM_001282488.2 NP_001269417.1 Accepted alive Link to Nucleotide Sequence:NM_001282488.2Link to Protein Sequence:NP_001269417.1Re-query CCDS DB by Nucleotide ID:NM_001282488Re-query CCDS DB by Protein ID:NP_001269417Link to BLAST:NP_001269417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269416.1 158 P49643-2 158 100% 0 0
NP_001269417.1 158 P49643-2 158 100% 0 0

Chromosomal Locations for CCDS 75477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57318446 57318599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57320457 57320560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57324201 57324280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57325925 57326063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTC
ATTGCCTTCAGTTTTACTTGCAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTAT
TGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTGAGCTATGTGAAAGGAACTGAACAATAC
CAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGATGAATATG
AACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAG
ACGCTGGTTCATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATT
CAGGATTTCTTAAAGGATAGCCAATTGCAGTTTGAGGCTGTAAGTATATTTTTGTAG

Translation (158 aa):
MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQY
QSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKI
QDFLKDSQLQFEAVSIFL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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