NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS756.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
756.2 Public Homo sapiens 1 SNX7 24 110 108 CCDS HistoryNCBI Gene:51375Re-query CCDS DB by CCDS ID:756.2Re-query CCDS DB by GeneID:51375See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 756.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 756.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529992.5 ENSP00000434731.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529992.5Link to Ensembl Protein Viewer:ENSP00000434731.1Re-query CCDS DB by Nucleotide ID:ENST00000529992Re-query CCDS DB by Protein ID:ENSP00000434731
Original member Current member NCBI NM_152238.4 NP_689424.2 Accepted alive Link to Nucleotide Sequence:NM_152238.4Link to Protein Sequence:NP_689424.2Re-query CCDS DB by Nucleotide ID:NM_152238Re-query CCDS DB by Protein ID:NP_689424Link to BLAST:NP_689424.2

Chromosomal Locations for CCDS 756.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 98661732 98661911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98684885 98685067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98691075 98691185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98695518 98695716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98698706 98698905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98701817 98701903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98738237 98738389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 98760054 98760131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGAGGGCGAGCGCCGGGCATCGCAGGCGCCCTCCTCGGGCCTCCCGGCCGGGGGCGCCAACGGGGAGA
GCCCGGGGGGCGGCGCCCCCTTTCCGGGCAGCAGTGGCTCTTCCGCCCTGCTGCAGGCGGAGGTGCTGGA
TCTGGACGAGGACGAGGACGACCTGGAGGTGTTCAGCAAGGATGCCTCATTGATGGACATGAACTCCTTC
AGCCCTATGATGCCAACATCCCCTTTATCAATGATAAACCAAATCAAGTTTGAGGATGAACCAGATTTAA
AGGATCTCTTCATCACAGTTGATGAACCTGAAAGTCATGTTACTACAATAGAAACTTTCATTACGTATAG
GATTATTACTAAGACATCTCGTGGGGAATTTGACTCCAGTGAATTTGAAGTTAGGAGACGATATCAAGAT
TTCCTTTGGTTGAAGGGAAAACTGGAAGAAGCACACCCCACTCTGATTATTCCAGAACTCTCTTCTCACA
AGAAGCAAGGTCCTGGCTTGCTAAGCAGGATGGGGCAAACCGTCAGAGCTGTTGCGTCCTCAATGAGAGG
AGTTAAAAACCGCCCAGAGGAGTTCATGGAAATGAATAACTTTATTGAACTATTTAGCCAGAAAATAAAT
TTGATAGATAAAATATCTCAGAGAATTTATAAGGAAGAAAGGGAATATTTTGATGAAATGAAAGAATATG
GCCCAATTCATATTCTGTGGTCAGCGTCAGAAGAGGATCTGGTTGATACTCTAAAGGATGTTGCCAGCTG
CATTGACAGATGCTGTAAGGCCACTGAAAAGCGGATGTCTGGACTCTCAGAGGCCCTGCTTCCTGTTGTA
CATGAGTACGTGCTTTATAGTGAAATGTTAATGGGTGTTATGAAAAGAAGAGACCAAATACAAGCAGAAC
TGGATTCCAAAGTTGAAGTTTTGACCTATAAAAAGGCAGATACTGATCTGCTTCCAGAGGAGATTGGAAA
ACTTGAAGATAAAGTGGAATGTGCTAATAATGCCCTGAAAGCAGATTGGGAGAGATGGAAACAAAATATG
CAAAATGATATCAAGTTAGCATTTACAGATATGGCTGAGGAGAATATCCATTATTATGAACAGTGCCTTG
CTACGTGGGAGTCATTCCTTACATCACAGACCAACCTTCACTTGGAAGAAGCCTCTGAAGATAAACCTTA
A

Translation (396 aa):
MEGERRASQAPSSGLPAGGANGESPGGGAPFPGSSGSSALLQAEVLDLDEDEDDLEVFSKDASLMDMNSF
SPMMPTSPLSMINQIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQD
FLWLKGKLEEAHPTLIIPELSSHKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIELFSQKIN
LIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVV
HEYVLYSEMLMGVMKRRDQIQAELDSKVEVLTYKKADTDLLPEEIGKLEDKVECANNALKADWERWKQNM
QNDIKLAFTDMAEENIHYYEQCLATWESFLTSQTNLHLEEASEDKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH