NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7593.1 Public Homo sapiens 10 GFRA1 24 110 108 CCDS HistoryNCBI Gene:2674Re-query CCDS DB by CCDS ID:7593.1Re-query CCDS DB by GeneID:2674See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7593.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369236.5 ENSP00000358239.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369236.5Link to Ensembl Protein Viewer:ENSP00000358239.1Re-query CCDS DB by Nucleotide ID:ENST00000369236Re-query CCDS DB by Protein ID:ENSP00000358239
Original member Current member EBI ENST00000439649.8 ENSP00000393725.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439649.8Link to Ensembl Protein Viewer:ENSP00000393725.3Re-query CCDS DB by Nucleotide ID:ENST00000439649Re-query CCDS DB by Protein ID:ENSP00000393725
Original member Current member EBI ENST00000684105.1 ENSP00000506818.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684105.1Link to Ensembl Protein Viewer:ENSP00000506818.1Re-query CCDS DB by Nucleotide ID:ENST00000684105Re-query CCDS DB by Protein ID:ENSP00000506818
Original member Current member EBI ENST00000682743.1 ENSP00000507970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682743.1Link to Ensembl Protein Viewer:ENSP00000507970.1Re-query CCDS DB by Nucleotide ID:ENST00000682743Re-query CCDS DB by Protein ID:ENSP00000507970
Original member Current member NCBI NM_001145453.4 NP_001138925.1 Accepted alive Link to Nucleotide Sequence:NM_001145453.4Link to Protein Sequence:NP_001138925.1Re-query CCDS DB by Nucleotide ID:NM_001145453Re-query CCDS DB by Protein ID:NP_001138925Link to BLAST:NP_001138925.1
Original member Current member NCBI NM_001348096.3 NP_001335025.1 Accepted alive Link to Nucleotide Sequence:NM_001348096.3Link to Protein Sequence:NP_001335025.1Re-query CCDS DB by Nucleotide ID:NM_001348096Re-query CCDS DB by Protein ID:NP_001335025Link to BLAST:NP_001335025.1
Original member Current member NCBI NM_001382556.2 NP_001369485.1 Accepted alive Link to Nucleotide Sequence:NM_001382556.2Link to Protein Sequence:NP_001369485.1Re-query CCDS DB by Nucleotide ID:NM_001382556Re-query CCDS DB by Protein ID:NP_001369485Link to BLAST:NP_001369485.1
Original member Current member NCBI NM_001382557.2 NP_001369486.1 Accepted alive Link to Nucleotide Sequence:NM_001382557.2Link to Protein Sequence:NP_001369486.1Re-query CCDS DB by Nucleotide ID:NM_001382557Re-query CCDS DB by Protein ID:NP_001369486Link to BLAST:NP_001369486.1
Original member Current member NCBI NM_001382558.2 NP_001369487.1 Accepted alive Link to Nucleotide Sequence:NM_001382558.2Link to Protein Sequence:NP_001369487.1Re-query CCDS DB by Nucleotide ID:NM_001382558Re-query CCDS DB by Protein ID:NP_001369487Link to BLAST:NP_001369487.1
Original member Current member NCBI NM_001382559.2 NP_001369488.1 Accepted alive Link to Nucleotide Sequence:NM_001382559.2Link to Protein Sequence:NP_001369488.1Re-query CCDS DB by Nucleotide ID:NM_001382559Re-query CCDS DB by Protein ID:NP_001369488Link to BLAST:NP_001369488.1
Original member Current member NCBI NM_145793.7 NP_665736.1 Accepted alive Link to Nucleotide Sequence:NM_145793.7Link to Protein Sequence:NP_665736.1Re-query CCDS DB by Nucleotide ID:NM_145793Re-query CCDS DB by Protein ID:NP_665736Link to BLAST:NP_665736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138925.1 460 P56159-2 460 100% 0 0
NP_001335025.1 460 P56159-2 460 100% 0 0
NP_001369485.1 460 P56159-2 460 100% 0 0
NP_001369486.1 460 P56159-2 460 100% 0 0
NP_001369487.1 460 P56159-2 460 100% 0 0
NP_001369488.1 460 P56159-2 460 100% 0 0
NP_665736.1 460 P56159-2 460 100% 0 0

Chromosomal Locations for CCDS 7593.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116064398 116064544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116065573 116065626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116089741 116089922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116093702 116093836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116096655 116096764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116125221 116125557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116269503 116269586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116270822 116271115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116271990 116272029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGTTCCTGGCGACCCTGTACTTCGCGCTGCCGCTCTTGGACTTGCTCCTGTCGGCCGAAGTGAGCGGCG
GAGACCGCCTGGATTGCGTGAAAGCCAGTGATCAGTGCCTGAAGGAGCAGAGCTGCAGCACCAAGTACCG
CACGCTAAGGCAGTGCGTGGCGGGCAAGGAGACCAACTTCAGCCTGGCATCCGGCCTGGAGGCCAAGGAT
GAGTGCCGCAGCGCCATGGAGGCCCTGAAGCAGAAGTCGCTCTACAACTGCCGCTGCAAGCGGGGTATGA
AGAAGGAGAAGAACTGCCTGCGCATTTACTGGAGCATGTACCAGAGCCTGCAGGGAAATGATCTGCTGGA
GGATTCCCCATATGAACCAGTTAACAGCAGATTGTCAGATATATTCCGGGTGGTCCCATTCATATCAGTG
GAGCACATTCCCAAAGGGAACAACTGCCTGGATGCAGCGAAGGCCTGCAACCTCGACGACATTTGCAAGA
AGTACAGGTCGGCGTACATCACCCCGTGCACCACCAGCGTGTCCAACGATGTCTGCAACCGCCGCAAGTG
CCACAAGGCCCTCCGGCAGTTCTTTGACAAGGTCCCGGCCAAGCACAGCTACGGAATGCTCTTCTGCTCC
TGCCGGGACATCGCCTGCACAGAGCGGAGGCGACAGACCATCGTGCCTGTGTGCTCCTATGAAGAGAGGG
AGAAGCCCAACTGTTTGAATTTGCAGGACTCCTGCAAGACGAATTACATCTGCAGATCTCGCCTTGCGGA
TTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAGCTGTCTAAAGGAAAACTACGCTGACTGC
CTCCTCGCCTACTCGGGGCTTATTGGCACAGTCATGACCCCCAACTACATAGACTCCAGTAGCCTCAGTG
TGGCCCCATGGTGTGACTGCAGCAACAGTGGGAACGACCTAGAAGAGTGCTTGAAATTTTTGAATTTCTT
CAAGGACAATACATGTCTTAAAAATGCAATTCAAGCCTTTGGCAATGGCTCCGATGTGACCGTGTGGCAG
CCAGCCTTCCCAGTACAGACCACCACTGCCACTACCACCACTGCCCTCCGGGTTAAGAACAAGCCCCTGG
GGCCAGCAGGGTCTGAGAATGAAATTCCCACTCATGTTTTGCCACCGTGTGCAAATTTACAGGCACAGAA
GCTGAAATCCAATGTGTCGGGCAATACACACCTCTGTATTTCCAATGGTAATTATGAAAAAGAAGGTCTC
GGTGCTTCCAGCCACATAACCACAAAATCAATGGCTGCTCCTCCAAGCTGTGGTCTGAGCCCACTGCTGG
TCCTGGTGGTAACCGCTCTGTCCACCCTATTATCTTTAACAGAAACATCATAG

Translation (460 aa):
MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNFSLASGLEAKD
ECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSPYEPVNSRLSDIFRVVPFISV
EHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCS
CRDIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADC
LLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQ
PAFPVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNYEKEGL
GASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH