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Report for CCDS76078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76078.1 Public Homo sapiens Y UTY 24 110 108 CCDS HistoryNCBI Gene:7404Re-query CCDS DB by CCDS ID:76078.1Re-query CCDS DB by GeneID:7404See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537580.6 ENSP00000439922.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537580.6Link to Ensembl Protein Viewer:ENSP00000439922.2Re-query CCDS DB by Nucleotide ID:ENST00000537580Re-query CCDS DB by Protein ID:ENSP00000439922
Original member Current member NCBI NM_001258256.1 NP_001245185.1 Accepted alive Link to Nucleotide Sequence:NM_001258256.1Link to Protein Sequence:NP_001245185.1Re-query CCDS DB by Nucleotide ID:NM_001258256Re-query CCDS DB by Protein ID:NP_001245185Link to BLAST:NP_001245185.1

Chromosomal Locations for CCDS 76078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 13249856 13249882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13260278 13260404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13297707 13297848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13298957 13299144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13302877 13302991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13305399 13305547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13306038 13306112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13306186 13306250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13323555 13323760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13324601 13324706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13326221 13326350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13335563 13336335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13355003 13355398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13355923 13356018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13357877 13357969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13359088 13359222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13359767 13359986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13360430 13360528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13366267 13366393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13369256 13369349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13393859 13393893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13396918 13396972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13410993 13411113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13414735 13414793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13449017 13449066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13470121 13470229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13479254 13479317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 13479514 13479665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4008 nt):
ATGAAATCCTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGG
AAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGG
TGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTA
GGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTGAAGGAAAAGTGGAGTCTGACTTCTTTT
GCCAATTAGGTCACTTCAACCTCTTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTA
CAGTTTACAGGCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTAC
AATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGAGCCA
AGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTT
TCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCAT
TTGTATGAAACCCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAGAAAACC
TTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGG
AGACAAAGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCT
GGCCAATCGTGGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTT
ACAGGCAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCA
GCAAAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCA
GCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAA
ATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGGCTCA
GTTGTGTAACCTTCCACAAAGTAGTCTACAGAATAAAACTAAATTACTTCCTAGTATTGAGGAGGCATGG
AGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGGGTGCCATGAACACAGCACAGCAGAATGGTTCTG
ATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACC
ACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAG
CTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAA
CTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAACC
ACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTT
TTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGTACAGACA
CTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCAAAA
TACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTA
TCTAACTCCGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTC
TGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCT
CACTCTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCA
GGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAA
CAAGCAGGCATACTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCA
GTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCT
CAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATA
ATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCAC
AGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCAC
AGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTT
TAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCAACAGA
AGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGT
CCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTA
GTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAA
CCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACT
TTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACT
GGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATA
CGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAA
GATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCA
TAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAA
ACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGC
ATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACT
TCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGG
TGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAA
GATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATG
CAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTAC
AGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTA
CCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGA
TTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAA
AGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGCTCTTTCA
TTATCATCCTCATCTTGA

Translation (1335 aa):
MKSCAVSLTTAAVAFGDEAKKMAEGKASRESEEESVSLTVEEREALGGMDSRLFGFVRLHEDGARTKTLL
GKAVRCYESLILKAEGKVESDFFCQLGHFNLLLEDYSKALSAYQRYYSLQADYWKNAAFLYGLGLVYFYY
NAFHWAIKAFQDVLYVDPSFCRAKEIHLRLGLMFKVNTDYKSSLKHFQLALIDCNPCTLSNAEIQFHIAH
LYETQRKYHSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIQYLQKSLEADPNS
GQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGHAA
AWMDLGTLYESCNQPQDAIKCYLNAARSKRCSNTSTLAARIKFLQAQLCNLPQSSLQNKTKLLPSIEEAW
SLPIPAELTSRQGAMNTAQQNGSDNWNGGQSLSHHPVQQVYSLCLTPQKLQHLEQLRANRDNLNPAQKHQ
LEQLESQFVLMQQMRHKEVAQVRTTGIHNGAITDSSLPTNSVSNRQPHGALTRVSSVSQPGVRPACVEKL
LSSGAFSAGCIPCGTSKILGSTDTILLGSNCIAGSESNGNVPYLQQNTHTLPHNHTDLNSSTEEPWRKQL
SNSAQGLHKSQSSCLSGPNEEQPLFSTGSAQYHQATSTGIKKANEHLTLPSNSVPQGDADSHLSCHTATS
GGQQGIMFTKESKPSKNRSLVPETSRHTGDTSNGCADVKGLSNHVHQLIADAVSSPNHGDSPNLLIADNP
QLSALLIGKANGNVGTGTCDKVNNIHPAVHTKTDHSVASSPSSAISTATPSPKSTEQRSINSVTSLNSPH
SGLHTVNGEGLGKSQSSTKVDLPLASHRSTSQILPSMSVSICPSSTEVLKACRNPGKNGLSNSCILLDKC
PPPRPPTSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKT
LVEANNEHMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQASSFQESLREENEKRTQHK
DHSDNESTSSENSGRRRKGPFKTIKFGTNIDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILG
MNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLE
DLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPLTACQYKLAVERYEWNKLKSVKSPV
PMVHLSWNMARNIKVSDPKLFEMIKYCLLKILKQYQTLREALVAAGKEVIWHGRTNDEPAHYCSICEALS
LSSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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