NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS76172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76172.1 Public Homo sapiens 1 ZZZ3 24 110 108 CCDS HistoryNCBI Gene:26009Re-query CCDS DB by CCDS ID:76172.1Re-query CCDS DB by GeneID:26009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370798.5 ENSP00000359834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370798.5Link to Ensembl Protein Viewer:ENSP00000359834.1Re-query CCDS DB by Nucleotide ID:ENST00000370798Re-query CCDS DB by Protein ID:ENSP00000359834
Original member Current member NCBI NM_001308237.2 NP_001295166.1 Accepted alive Link to Nucleotide Sequence:NM_001308237.2Link to Protein Sequence:NP_001295166.1Re-query CCDS DB by Nucleotide ID:NM_001308237Re-query CCDS DB by Protein ID:NP_001295166Link to BLAST:NP_001295166.1
Original member Current member NCBI NM_001376155.1 NP_001363084.1 Accepted alive Link to Nucleotide Sequence:NM_001376155.1Link to Protein Sequence:NP_001363084.1Re-query CCDS DB by Nucleotide ID:NM_001376155Re-query CCDS DB by Protein ID:NP_001363084Link to BLAST:NP_001363084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295166.1 409 Q8IYH5-3 409 100% 0 0
NP_001363084.1 409 Q8IYH5-3 409 100% 0 0

Chromosomal Locations for CCDS 76172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77565640 77565784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77566081 77566181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77568332 77568466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77576068 77576220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77578774 77578869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77579527 77579628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77580998 77581069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77581776 77581891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77581979 77582126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77584517 77584655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77639449 77639471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGATAGATCTTTGGTTGTACAGTTATCAGAGACTATTACAGACGATTGCTGTACTCGAGGCTCAGCGTT
CTCAAGCAGTCCAAGACCTTGAAAGTTTAGGCAGGCACCAGAGAGAAGCACTGAAAAATCCCATTGGATT
TGTGGAAAAACTCCAGAAGAAGGCTGATATTGGGCTTCCATATCCACAGAGAGTTGTTCAATTGCCTGAG
ATCGTATGGGACCAATATACCCATAGCCTTGGGAATTTTGAAAGAGAATTTAAAAATCGTAAAAGACATA
CTAGAAGAGTTAAGCTAGTTTTTGATAAAGTAGGTTTACCTGCTAGACCAAAAAGTCCTTTAGATCCTAA
GAAGGATGGAGAGTCCCTTTCATATTCTATGTTGCCTTTGAGTGATGGTCCAGAAGGCTCAAGCAGTCGT
CCTCAGATGATAAGAGGACGCTTGTGTGATGATACCAAACCTGAAACATTTAACCAGTTGTGGACTGTTG
AAGAACAGAAAAAGCTGGAACAGCTACTCATCAAATACCCTCCTGAAGAAGTAGAATCTCGACGCTGGCA
GAAGATAGCAGATGAATTGGGCAACAGGACAGCAAAACAGGTTGCCAGCCGAGTACAGAAGTATTTCATA
AAGCTAACTAAAGCTGGCATTCCAGTACCAGGCAGAACACCAAACTTATATATATACTCCAAAAAGTCTT
CAACAAGCAGACGACAGCACCCTCTTAATAAGCATCTCTTTAAGCCTTCCACTTTCATGACTTCACATGA
ACCGCCAGTGTATATGGATGAAGATGATGACCGATCTTGTTTTCATAGCCACATGAACACTGCTGTTGAA
GATGCATCAGATGACGAAAGTATTCCTATCATGTATAGGAATTTACCTGAATATAAAGAACTATTACAGT
TTAAAAAGTTAAAGAAGCAGAAACTTCAGCAAATGCAAGCTGAAAGTGGATTTGTGCAACATGTGGGCTT
TAAGTGTGATAACTGTGGCATAGAACCCATCCAGGGTGTTCGGTGGCATTGCCAGGATTGTCCTCCAGAA
ATGTCTTTGGATTTCTGTGATTCTTGTTCAGACTGTCTACATGAAACAGATATTCACAAGGAAGATCACC
AATTAGAACCTATTTATAGGTCAGAGACATTCTTAGACAGAGACTACTGTGTGTCTCAGGGCACCAGTTA
CAATTACCTTGACCCAAACTACTTTCCAGCAAACAGATGA

Translation (409 aa):
MIDLWLYSYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPE
IVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSR
PQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFI
KLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTAVE
DASDDESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPE
MSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYNYLDPNYFPANR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH