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Report for CCDS7632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7632.1 Public Homo sapiens 10 C10orf88 24 110 108 CCDS HistoryNCBI Gene:80007Re-query CCDS DB by CCDS ID:7632.1Re-query CCDS DB by GeneID:80007See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7632.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000481909.2 ENSP00000419126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000481909.2Link to Ensembl Protein Viewer:ENSP00000419126.1Re-query CCDS DB by Nucleotide ID:ENST00000481909Re-query CCDS DB by Protein ID:ENSP00000419126
Original member Current member NCBI NM_024942.4 NP_079218.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024942.4Link to Protein Sequence:NP_079218.2Re-query CCDS DB by Nucleotide ID:NM_024942Re-query CCDS DB by Protein ID:NP_079218Link to BLAST:NP_079218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079218.2 445 Q9H8K7 445 100% 0 0

Chromosomal Locations for CCDS 7632.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 122932427 122932661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122937705 122938159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122948649 122948855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122951954 122952026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122952829 122953032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122954015 122954178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAGACGCGGACCGAGGACGGGGGCCTCACCCGCCGCCCCACGCTGGCCTCTTCTTGGGATGTTGCAG
GCGGGGCCCTGACCCACAGCCTCCTCCTCACCCGGGCCGGTCTCGGCCCCGGTGACTTCGACTGGGAGGA
GCTGCTGGCACCGCCTGCTCCAGGTCAGGATCTGGTGATTTTGAAGAGAAACCACAACAACAAAGATGAA
AACCCCTGCTTCCTTTACCTGAGGTGTGGCCCTGATGGAGGTGAAGAAATCGCTTCTATTGGCATTTTAA
GTTCAGCAAGAAATATGGAAGTGTACTTAGGAGAGGAGTACTGTGGAACCAGTAGGGGCAAGAATGTTTG
TACTGTCCTGGATGACAGTGAACATGAAAAGATCATTTTGTATAAAAAAAATCTAAAATTGGAGTCCTCC
ACACATGCTTGTAAAATAAAGTTGCTCTCCTTTGGCGAAAGGCAGTGTGTGTTCATCAGTAAAGTTGTGG
TACACATGAGATCAGTTTTTGCAAATTCTTCAACAAGCTCTCCTGCTCTAGGATCAAGGATAGACCTTGA
CAAGGTCCAAACCATAATGGAGTCCATGGGGTCAAAGTTATCTCCTGGAGCTCAGCAGTTGATGGATATG
GTTAGGTGTCAGCAGCGGAATTGTATTCCCATTGGAGAGCAGCTTCAGTCGGTGTTGGGCAATTCTGGAT
ACAAGCATATGATTGGACTACAATCCTCATCTACCTTAGGAACCTTAAACAAGTCGTCCTCCACACCTTT
TCCTTTTAGAACTGGATTGACATCTGGGAACGTGACTGAAAACTTACAAACTTACATTGATAAAAGTACA
CAACTGCCTGGTGGAGAGAATTCTACCAAGCTTGATGAGTGTAAAGTTATGCCTCAAAACCATTCCTTTC
TTGAAAATGATCTTAAAAATGCAATGGCCTCTTTCTTACCAAAGAAAGTAAGTGACAACTCAAATATACC
CAACTCCGAGTTGCTGCCTTTTCTCCAGAATTTATGTAGTCAAGTTAATCATCTCCATGTGGGAAATAAG
ACCGAGTGTCAGGAAAACATCACCAAGCATGGTGAACGCATTCTTGGTGTTGGAATGGAAGAGCAATCTA
TTTGCTCCTACTTGGAAAAGATTCTTTCTAAAAATATGGAACTGATGGAAAAGAAACTTATGGATTACAT
TGATCAGCGAATACATGAACTCCAGGAGCACATTGATGATAAGATTGCTTTGTTACTGGATTTGCTGCAA
AATCCTAACTCCCCGCCCACTGGGATACCTCTAAGACATTATGACTCTGGAGAAAGACTTTCAAATGGAG
AAAGATAA

Translation (445 aa):
METRTEDGGLTRRPTLASSWDVAGGALTHSLLLTRAGLGPGDFDWEELLAPPAPGQDLVILKRNHNNKDE
NPCFLYLRCGPDGGEEIASIGILSSARNMEVYLGEEYCGTSRGKNVCTVLDDSEHEKIILYKKNLKLESS
THACKIKLLSFGERQCVFISKVVVHMRSVFANSSTSSPALGSRIDLDKVQTIMESMGSKLSPGAQQLMDM
VRCQQRNCIPIGEQLQSVLGNSGYKHMIGLQSSSTLGTLNKSSSTPFPFRTGLTSGNVTENLQTYIDKST
QLPGGENSTKLDECKVMPQNHSFLENDLKNAMASFLPKKVSDNSNIPNSELLPFLQNLCSQVNHLHVGNK
TECQENITKHGERILGVGMEEQSICSYLEKILSKNMELMEKKLMDYIDQRIHELQEHIDDKIALLLDLLQ
NPNSPPTGIPLRHYDSGERLSNGER


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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