NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77746.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77746.2 Public Homo sapiens 3 IFRD2 24 110 108 CCDS HistoryNCBI Gene:7866Re-query CCDS DB by CCDS ID:77746.2Re-query CCDS DB by GeneID:7866See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 77746.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436390.5 ENSP00000392316.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436390.5Link to Ensembl Protein Viewer:ENSP00000392316.1Re-query CCDS DB by Nucleotide ID:ENST00000436390Re-query CCDS DB by Protein ID:ENSP00000392316
Original member Current member EBI ENST00000417626.8 ENSP00000402849.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417626.8Link to Ensembl Protein Viewer:ENSP00000402849.4Re-query CCDS DB by Nucleotide ID:ENST00000417626Re-query CCDS DB by Protein ID:ENSP00000402849
Original member Current member NCBI NM_006764.5 NP_006755.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006764.5Link to Protein Sequence:NP_006755.5Re-query CCDS DB by Nucleotide ID:NM_006764Re-query CCDS DB by Protein ID:NP_006755Link to BLAST:NP_006755.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006755.5 442 Q12894 442 100% 0 0

Chromosomal Locations for CCDS 77746.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50288191 50288271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50288409 50288504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50288583 50288711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50288800 50288937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50289255 50289360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50289447 50289628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50289712 50289762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50289929 50290086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50290170 50290294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50290388 50290472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50290560 50290679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50292217 50292274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGCCTCGCGCCCGTAAGGGCAACACGCTCCGGAAGGGTGGTCAGCGCCGTGGAGGAGGTGCCCGGAGCA
GTGCCCAAGCTGACTCGGGTTCCAGTGACGATGAGGCAGCCAGTGAGGCCCGCAGCACCGCCAGTGAATG
CCCCAGCCTTCTCAGCACCACTGCAGAGGACAGCCTTGGGGGGGATGTCGTGGATGAGCAGGGCCAGCAG
GAAGACCTTGAGGAAAAGCTGAAGGAGTATGTGGACTGTCTCACAGACAAGAGTGCCAAGACCCGGCAGG
GTGCTCTTGAGAGCCTGCGCCTGGCCCTAGCGTCCCGCCTACTCCCCGACTTCTTGCTGGAGCGCCGCCT
CACGCTAGCCGATGCCCTGGAAAAGTGCCTCAAGAAAGGGAAGGGCGAGGAACAAGCCCTGGCTGCTGCT
GTGCTAGGCCTGCTCTGCGTGCAGCTGGGCCCTGGACCTAAGGGTGAGGAGCTGTTTCACAGCCTGCAGC
CTCTGCTGGTCTCTGTGCTCAGTGACAGCACAGCTAGCCCTGCTGCCCGGCTCCACTGTGCTTCTGCCCT
TGGCCTGGGCTGCTACGTGGCTGCCGCTGACATCCAGGACCTGGTCTCTTGCCTTGCCTGCTTAGAAAGT
GTTTTCAGCCGGTTCTATGGCTTGGGGGGCAGCTCCACAAGTCCTGTGGTTCCTGCCAGCCTGCACGGCC
TGCTCTCTGCTGCCCTGCAGGCCTGGGCATTGCTGCTCACCATCTGCCCTAGCACCCAAATCAGCCACAT
CCTTGACAGGCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGGATCGCTGCC
GGTGAAACCATTGCACTGCTCTTTGAGCTTGCCCGGGACCTTGAGGAGGAGTTTGTTTACGAGGACATGG
AGGCCCTCTGCAGTGTCCTGCGCACTCTGGCCACTGACAGTAACAAGTACCGTGCCAAGGCTGATCGTCG
GCGCCAGCGCTCTACTTTCCGCGCCGTGCTGCACTCCGTGGAGGGCGGTGAATGCGAAGAAGAGATAGTG
CGCTTCGGCTTTGAGGTGCTCTACATGGACAGCTGGGCTCGGCACCGGATCTACGCTGCCTTCAAGGAAG
TGCTGGGTTCGGGCATGCACCACCACCTCCAGAACAATGAGCTACTCCGTGACATCTTTGGCCTGGGCCC
TGTGCTGTTGCTGGATGCCACTGCCCTGAAGGCCTGCAAGGTTCCACGCTTTGAGAAGCACCTGTACAAT
GCTGCTGCCTTCAAAGCCCGGACCAAGGCTCGAAGCCGTGTGCGGGACAAGCGGGCAGACATCCTGTGA

Translation (442 aa):
MPRARKGNTLRKGGQRRGGGARSSAQADSGSSDDEAASEARSTASECPSLLSTTAEDSLGGDVVDEQGQQ
EDLEEKLKEYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERRLTLADALEKCLKKGKGEEQALAAA
VLGLLCVQLGPGPKGEELFHSLQPLLVSVLSDSTASPAARLHCASALGLGCYVAAADIQDLVSCLACLES
VFSRFYGLGGSSTSPVVPASLHGLLSAALQAWALLLTICPSTQISHILDRQLPRLPQLLSSESVNLRIAA
GETIALLFELARDLEEEFVYEDMEALCSVLRTLATDSNKYRAKADRRRQRSTFRAVLHSVEGGECEEEIV
RFGFEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGLGPVLLLDATALKACKVPRFEKHLYN
AAAFKARTKARSRVRDKRADIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH