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Report for CCDS77942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77942.1 Public Homo sapiens 4 ADH4 24 110 108 CCDS HistoryNCBI Gene:127Re-query CCDS DB by CCDS ID:77942.1Re-query CCDS DB by GeneID:127See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508393.5 ENSP00000424630.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508393.5Link to Ensembl Protein Viewer:ENSP00000424630.1Re-query CCDS DB by Nucleotide ID:ENST00000508393Re-query CCDS DB by Protein ID:ENSP00000424630
Original member Current member EBI ENST00000505590.5 ENSP00000425416.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505590.5Link to Ensembl Protein Viewer:ENSP00000425416.1Re-query CCDS DB by Nucleotide ID:ENST00000505590Re-query CCDS DB by Protein ID:ENSP00000425416
Original member Current member NCBI NM_001306171.2 NP_001293100.1 Accepted alive Link to Nucleotide Sequence:NM_001306171.2Link to Protein Sequence:NP_001293100.1Re-query CCDS DB by Nucleotide ID:NM_001306171Re-query CCDS DB by Protein ID:NP_001293100Link to BLAST:NP_001293100.1
Original member Current member NCBI NM_001306172.2 NP_001293101.1 Accepted alive Link to Nucleotide Sequence:NM_001306172.2Link to Protein Sequence:NP_001293101.1Re-query CCDS DB by Nucleotide ID:NM_001306172Re-query CCDS DB by Protein ID:NP_001293101Link to BLAST:NP_001293101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293100.1 399 P08319-2 399 100% 0 0
NP_001293101.1 399 P08319-2 399 100% 0 0

Chromosomal Locations for CCDS 77942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99124442 99124466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99126594 99126732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99127209 99127344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99131504 99131764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99136466 99136697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99139061 99139148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99141541 99141682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99142679 99142780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99143166 99143240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCTTGTCCGAGGACCACACTTCGAGTTGCAGAGATGTAAAACACATCTATTCTCCAGCAATTATCTGA
CTCAGGTTATTAAATGCAAAGCAGCCATCGCCTGGGAAGCAGGCAAGCCCCTTTGCATTGAAGAGGTTGA
AGTAGCTCCCCCCAAGGCTCATGAAGTTCGCATTCAGATCATTGCTACCTCTCTGTGCCATACTGATGCC
ACTGTTATCGATTCTAAATTTGAGGGCCTAGCTTTCCCAGTGATCGTTGGCCATGAGGCTGCAGGTATTG
TGGAAAGTATTGGGCCAGGAGTGACCAACGTCAAACCAGGTGACAAAGTAATTCCACTTTATGCACCTCT
ATGTAGAAAATGCAAGTTTTGTCTGAGTCCACTCACAAATTTGTGTGGGAAAATCAGTAATCTCAAAAGT
CCTGCTAGTGATCAACAACTAATGGAAGACAAAACCAGCAGGTTTACCTGCAAAGGAAAACCAGTTTACC
ATTTCTTTGGAACCAGTACATTCTCTCAGTACACTGTGGTGTCAGATATCAATCTTGCCAAAATAGATGA
TGATGCAAATTTAGAGAGAGTTTGTCTGCTTGGATGTGGGTTTTCAACTGGCTATGGGGCTGCAATCAAC
AATGCCAAGGTCACCCCTGGTTCGACTTGTGCTGTCTTTGGCCTAGGAGGTGTGGGTCTTTCTGCTGTAA
TGGGTTGTAAAGCAGCAGGAGCTTCCAGAATCATAGGTATTGACATCAACAGTGAGAAGTTTGTGAAGGC
TAAAGCCCTGGGAGCCACTGACTGCCTCAATCCTAGAGACTTACATAAACCGATCCAGGAAGTTATCATT
GAATTGACCAAGGGAGGTGTGGATTTTGCCCTTGACTGTGCAGGTGGATCTGAAACCATGAAAGCAGCCC
TGGACTGTACAACCGCAGGCTGGGGATCATGTACTTTCATTGGAGTAGCTGCTGGTAGCAAAGGATTGAC
TATTTTTCCAGAGGAGCTAATAATCGGCCGTACTATAAATGGAACATTCTTTGGTGGTTGGAAAAGTGTA
GATTCTATCCCAAAGCTGGTCACTGACTATAAGAATAAGAAATTCAATCTGGATGCACTGGTGACCCATA
CCCTGCCTTTTGACAAAATCAGTGAGGCATTTGACCTAATGAACCAAGGAAAAAGCGTCCGAACAATCCT
CATCTTTTGA

Translation (399 aa):
MLVRGPHFELQRCKTHLFSSNYLTQVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDA
TVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKS
PASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAIN
NAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVII
ELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTIFPEELIIGRTINGTFFGGWKSV
DSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSVRTILIF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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