NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78090.1 Public Homo sapiens 5 SIMC1 24 110 108 CCDS HistoryNCBI Gene:375484Re-query CCDS DB by CCDS ID:78090.1Re-query CCDS DB by GeneID:375484See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332772.4 ENSP00000331311.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332772.4Link to Ensembl Protein Viewer:ENSP00000331311.4Re-query CCDS DB by Nucleotide ID:ENST00000332772Re-query CCDS DB by Protein ID:ENSP00000331311
Original member Current member NCBI NM_001308200.2 NP_001295129.1 Accepted alive Link to Nucleotide Sequence:NM_001308200.2Link to Protein Sequence:NP_001295129.1Re-query CCDS DB by Nucleotide ID:NM_001308200Re-query CCDS DB by Protein ID:NP_001295129Link to BLAST:NP_001295129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295129.1 333 Q8NDZ2-4 333 100% 0 0

Chromosomal Locations for CCDS 78090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176313425 176313484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176313691 176313845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176322273 176322425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176324629 176324757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176336720 176336876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176337062 176337146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176345183 176345445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCCTAGATCCTTTGAACAAGTAATAATACTTAAAAAATGGTTTCTGAAACCTTATAAGGGACAAACTC
TGCCTGGGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACCCTAGAAGATGACTTTCAGCAGACCCTGAG
GAGGCAACGGCAGCACCTGCAGCAATCCATTGCAAACATGGTGCTTTCCTGTGACAAGCAGCCCCACAAT
GTCAGGGATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATGGATTGACTCAGCCCCCAAATGGAA
ATCAAACGTCTTCAGGAACAGGAATCTTGAAAGCCAGCAGTAGCCACCCTTCTTCCCAGCCCAACCTGAC
AAAGAACACCAATCAGCTGATTGTGTGCCAGCTTCAGAGGATGCTCTCCATAGCCGTAGAGGTGGACAGG
ACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGA
GCCAGAGAGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGTTAGAAATCATATT
CCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCAGGCCCTCTACTTTCTGAATAAT
TCTACGTCACTGCTCAAGTGTCAGTCAGATAAAAGCCAGTGGCAGACTTGGGACGAATTGGTTGAGCATC
TGCAGTTTCTGCTGTCCAGTTATCAACATGTTTTAAGAGAACACTTAAGGAGTTCCGTGATCGACCGAAA
GGACTTAATAATCAAAAGGATTAAGCCCAAACCCCAGCAAGGAGATGACATCACAGTGGTAGACGTAGAG
AAGCAGATTGAGGCCTTCCGCAGCCGCCTGATCCAGATGCTGGGGGAGCCTCTTGTCCCCCAACTCCAAG
ACAAAGTGCACTTGTTGAAGCTCCTGCTCTTCTATGCTGCGGACTTGAACCCTGATGCAGAGCCCTTTCA
AAAGGGCTGGAGCGGCTCCTGA

Translation (333 aa):
MPRSFEQVIILKKWFLKPYKGQTLPGRVLFLRYVVQTLEDDFQQTLRRQRQHLQQSIANMVLSCDKQPHN
VRDVIKWLVKAVTEDGLTQPPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQLQRMLSIAVEVDR
TPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNN
STSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVE
KQIEAFRSRLIQMLGEPLVPQLQDKVHLLKLLLFYAADLNPDAEPFQKGWSGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH