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Report for CCDS78499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78499.1 Public Homo sapiens X PLS3 24 110 108 CCDS HistoryNCBI Gene:5358Re-query CCDS DB by CCDS ID:78499.1Re-query CCDS DB by GeneID:5358See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289290.7 ENSP00000289290.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289290.7Link to Ensembl Protein Viewer:ENSP00000289290.4Re-query CCDS DB by Nucleotide ID:ENST00000289290Re-query CCDS DB by Protein ID:ENSP00000289290
Original member Current member NCBI NM_001282337.2 NP_001269266.1 Accepted alive Link to Nucleotide Sequence:NM_001282337.2Link to Protein Sequence:NP_001269266.1Re-query CCDS DB by Nucleotide ID:NM_001282337Re-query CCDS DB by Protein ID:NP_001269266Link to BLAST:NP_001269266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269266.1 617 P13797-2 617 100% 0 0

Chromosomal Locations for CCDS 78499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 115610915 115610921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115622246 115622409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115629198 115629327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115629835 115629967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115634000 115634081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115634881 115635046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115636836 115636978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115640110 115640136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115640408 115640503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115643313 115643508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115645021 115645099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115646072 115646186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115646402 115646535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115647550 115647673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115647893 115648017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115649429 115649561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGAAGATCTCAACAGCAACGGATTCATTTGTGACTATGAACTTCATGAGCTCTTCAAGGAAGCTAATA
TGCCATTACCAGGATATAAAGTGAGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAATAAAGA
TGGGAAAATAAGTTTTGACGAATTTGTTTATATTTTTCAAGAGGTAAAAAGTAGTGATATTGCCAAGACC
TTCCGCAAAGCAATCAACAGGAAAGAAGGTATTTGTGCTCTGGGTGGAACTTCAGAGTTGTCCAGCGAAG
GAACACAGCATTCTTACTCAGAGGAAGAAAAATATGCTTTTGTTAACTGGATAAACAAAGCTTTGGAAAA
TGATCCTGATTGTAGACATGTTATACCAATGAACCCTAACACCGATGACCTGTTCAAAGCTGTTGGTGAT
GGAATTGTGCTTTGTAAAATGATTAACCTTTCAGTTCCTGATACCATTGATGAAAGAGCAATCAACAAGA
AGAAACTTACACCCTTCATCATTCAGGAAAACTTGAACTTGGCACTGAACTCTGCTTCTGCCATTGGGTG
TCATGTTGTGAACATTGGTGCAGAAGATTTGAGGGCTGGGAAACCTCATCTGGTTTTGGGACTGCTTTGG
CAGATCATTAAGATCGGTTTGTTCGCTGACATTGAATTAAGCAGGAATGAAGCCTTGGCTGCTTTACTCC
GAGATGGTGAGACTTTGGAGGAACTTATGAAATTGTCTCCAGAAGAGCTTCTGCTTAGATGGGCAAACTT
TCATTTGGAAAACTCGGGCTGGCAAAAAATTAACAACTTTAGTGCTGACATCAAGCTTATTGACTTCAGT
AATTCAGTGAAGGATTCCAAAGCCTATTTCCATCTTCTCAATCAAATCGCACCAAAAGGACAAAAGGAAG
GTGAACCACGGATAGATATTAACATGTCAGGTTTCAATGAAACAGATGATTTGAAGAGAGCTGAGAGTAT
GCTTCAACAAGCAGATAAATTAGGTTGCAGACAGTTTGTTACCCCTGCTGATGTTGTCAGTGGAAACCCC
AAACTCAACTTAGCTTTCGTGGCTAACCTGTTTAATAAATACCCAGCACTAACTAAGCCAGAGAACCAGG
ATATTGACTGGACTCTATTAGAAGGAGAAACTCGTGAAGAAAGAACCTTCCGTAACTGGATGAACTCTCT
TGGTGTCAATCCTCACGTAAACCATCTCTATGCTGACCTGCAAGATGCCCTGGTAATCTTACAGTTATAT
GAACGAATTAAAGTTCCTGTTGACTGGAGTAAGGTTAATAAACCTCCATACCCGAAACTGGGAGCCAACA
TGAAAAAGCTAGAAAACTGCAACTATGCTGTTGAATTAGGGAAGCATCCTGCTAAATTCTCCCTGGTTGG
CATTGGAGGGCAAGACCTGAATGATGGGAACCAAACCCTGACTTTAGCTTTAGTCTGGCAGCTGATGAGA
AGATATACCCTCAATGTCCTGGAAGATCTTGGAGATGGTCAGAAAGCCAATGACGACATCATTGTGAACT
GGGTGAACAGAACGTTGAGTGAAGCTGGAAAATCAACTTCCATTCAGAGTTTTAAGGACAAGACGATCAG
CTCCAGTTTGGCAGTTGTGGATTTAATTGATGCCATCCAGCCAGGCTGTATAAACTATGACCTTGTGAAG
AGTGGCAATCTAACAGAAGATGACAAGCACAATAATGCCAAGTATGCAGTGTCAATGGCTAGAAGAATCG
GAGCCAGAGTGTATGCTCTCCCTGAAGACCTTGTGGAAGTAAAGCCCAAGATGGTCATGACTGTGTTTGC
ATGTTTGATGGGCAGGGGAATGAAGAGAGTGTAA

Translation (617 aa):
MEDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDGDRNKDGKISFDEFVYIFQEVKSSDIAKT
FRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGD
GIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLW
QIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKLIDFS
NSVKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNP
KLNLAFVANLFNKYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLY
ERIKVPVDWSKVNKPPYPKLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALVWQLMR
RYTLNVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK
SGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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