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Report for CCDS78549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78549.1 Public Mus musculus 1 Eloc 23 108 98 CCDS HistoryNCBI Gene:67923Re-query CCDS DB by CCDS ID:78549.1Re-query CCDS DB by GeneID:67923See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187910.6 ENSMUSP00000139480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187910.6Link to Ensembl Protein Viewer:ENSMUSP00000139480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187910Re-query CCDS DB by Protein ID:ENSMUSP00000139480
Original member NCBI NM_001310470.1 NP_001297399.1 Updated not alive Link to Nucleotide Sequence:NM_001310470.1Link to Protein Sequence:NP_001297399.1Re-query CCDS DB by Nucleotide ID:NM_001310470Re-query CCDS DB by Protein ID:NP_001297399
Current member NCBI NM_001310470.2 NP_001297399.1 Accepted alive Link to Nucleotide Sequence:NM_001310470.2Link to Protein Sequence:NP_001297399.1Re-query CCDS DB by Nucleotide ID:NM_001310470Re-query CCDS DB by Protein ID:NP_001297399Link to BLAST:NP_001297399.1

Chromosomal Locations for CCDS 78549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16643288 16643478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16645686 16645829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16646988 16647053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16647955 16647958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGACTCCCTGGAACTGGAGGAGGAAGAGGAGGAGGGTGGTGGTAGTGGTCGTCGTGGTCGTCGTCATG
ATGGAGAGGAGAAGACCTATGGTGGCTGTGAAGGCCCTGATGCTATGTATGTGAAATTAATATCTTCTGA
TGGCCATGAATTTATTGTAAAAAGAGAACATGCACTAACATCAGGAACAATAAAGGCTATGTTGAGTGGT
CCAGGTCAGTTTGCTGAGAATGAAACCAACGAGGTCAATTTTAGAGAGATCCCCTCACATGTGCTATCAA
AAGTGTGCATGTATTTTACCTACAAGGTCCGCTATACTAACAGCTCCACTGAAATTCCTGAATTCCCAAT
TGCACCTGAAATTGCACTGGAACTGCTGATGGCTGCAAACTTCCTAGATTGTTAA

Translation (134 aa):
MDSLELEEEEEEGGGSGRRGRRHDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSG
PGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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