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Report for CCDS78622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78622.1 Public Mus musculus 1 Dnajb2 23 108 98 CCDS HistoryNCBI Gene:56812Re-query CCDS DB by CCDS ID:78622.1Re-query CCDS DB by GeneID:56812See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188931.6 ENSMUSP00000140566.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188931.6Link to Ensembl Protein Viewer:ENSMUSP00000140566.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188931Re-query CCDS DB by Protein ID:ENSMUSP00000140566
Original member Current member NCBI NM_001159883.1 NP_001153355.1 Accepted alive Link to Nucleotide Sequence:NM_001159883.1Link to Protein Sequence:NP_001153355.1Re-query CCDS DB by Nucleotide ID:NM_001159883Re-query CCDS DB by Protein ID:NP_001153355Link to BLAST:NP_001153355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153355.1 324 Q9QYI5-3 324 100% 0 0

Chromosomal Locations for CCDS 78622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75236884 75236948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75237455 75237564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75239280 75239333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75239508 75239630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75240892 75240984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75241171 75241273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75241409 75241479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75243458 75243813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTCCCCTGATGACATCAAGAAGGCGTACC
GAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCGGATAATAAAGAATTTGCTGAAAAAAAATTTAA
GGAGGTGGCAGAGGCCTATGAAGTACTATCTGACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGG
GAAGGGCTGACCGGGGCAGGAAGTGGTCCTTCTCGATCGGAAACTGGTGGTGCGGGGCCTGGCTTCACAT
TCACCTTCCGTAGCCCCGAGGAAGTCTTCCGGGAGTTCTTCGGGAGCGGAGACCCTTTTTCAGAGCTCTT
TGATGACTTGGGTGTCTTCTCGGAGCTTCAGAACCAGGGTCCCCGACTCACGGGCCCTTTCTTCACTTTC
TCTTCTTCCTTTCCTGCCAACTCCGATTTCTCCTCCTCATCTTTCTCCTTCAGCCCGGGGGCTGGTGCTT
TCCGCTCCGTTTCTACGTCCACCACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGGAGAA
CGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAACTGAAGTCAGTGTCAATCAATGGTGTCCCAGAT
GACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAACCTTCAGTTGCCCCTGGGCTGGGGGTCA
TGCAGGTCCGGCCGACCTCTCTCTCTCGTCCCCCTGACCATGATCTTTCTGAGGATGAGGACCTGCAGCT
CGCCATGGCTTACAGCCTGTCAGAGATGGAGGCGGCTGGGCAGAAGCCAGCAGGTGGGCGGGGGGCACAG
CAACGACAGCATGGGCAGCCCAAGGCCCAGCACCGAGACCTTGACGTGGGGGGCACCCATAAGAGTGTGA
GGGGCGAGGCAGCTAAACTCAGCCCGTCCTCAGAGGAGAAGGCCTCTCGCTGCCACATTCTCTGA

Translation (324 aa):
MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR
EGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGVFSELQNQGPRLTGPFFTF
SSSFPANSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSINGVPD
DLALGLELSRREQQPSVAPGLGVMQVRPTSLSRPPDHDLSEDEDLQLAMAYSLSEMEAAGQKPAGGRGAQ
QRQHGQPKAQHRDLDVGGTHKSVRGEAAKLSPSSEEKASRCHIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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