CCDS Report for Consensus CDS

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Report for CCDS78702.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
78702.1	Public	Mus musculus	1	Edem3	23	108	98

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78702.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000191070.1	ENSMUSP00000140234.1	Accepted	alive
		NCBI	NM_001311165.1	NP_001298094.1	Accepted	alive

Chromosomal Locations for CCDS 78702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)

Genome Browser links:

Chromosome	Start	Stop
1	151755567	151755727
1	151759738	151759783
1	151770832	151770932
1	151771410	151771449
1	151775857	151775969
1	151777406	151777559
1	151782373	151782507
1	151784739	151784844
1	151792328	151792425
1	151794676	151794801
1	151794980	151795063
1	151796066	151796149
1	151796783	151796907
1	151804278	151804443
1	151804665	151804819
1	151805850	151805946
1	151807366	151807557
1	151808204	151808369
1	151811519	151811704
1	151812754	151812768
1	151818310	151818713

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGAGCAAAGCCGGCGGCTGCCGGGGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGG CAGCGACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAG GGAAGAGAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCATGCTTATGGCAACTATATGGAA CATGCCTACCCAGCTGATGAGCTCATGCCTTTAACCTGCCGGGGCCGTGTCAGAGGCCAGGAGCCCAGCC GGGGCGATGTGGATGACGCCTTGGGAAAGTTTTCCCTAACACTGATTGATTCTTTGGACACTCTTGTGGT ATTAAACAAAACTAAGGAATTTGAAGATGCTGTGAGAAAAGTTTTAAGGGATGTTAATTTAGATAATGAT GTAGTTGTTTCAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGGGCGGACACTCGCTGGCCA TCATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAATGACGAGCTCCTCCACATGGCAAAGCAGCT GGGTTACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCCTTCCGTACCCCAGGATTAATTTAAAGTTT GGCATCAGAAAACCAGAAGCCAGGACGGGAACAGAGACAGACACCTGTACAGCCTGTGCAGGCACCTTGA TCCTCGAGTTTGCTGCACTGAGTCGATTCACAGGAGCGACCATATTTGAGGAATATGCAAGAAAAGCTCT TGATTTTCTCTGGGAGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGA GACTGGGTACGCAAAGATAGTGGAGTTGGAGCGGGGATCGACTCCTATTATGAGTATCTGTTGAAAGCCT ATGTCTTGCTTGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTACGATGCCATAATGAGGTATAT AAGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGAT GCATTGCTTGCCTTTTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATTAGACCTGCTATTGAAACTCACG AAATGTTATACCAGGTGATTAAAAAACACAATTTTCTACCAGAGGCATTTACTACAGATTTCAGGGTCCA TTGGGCTCAGCATCCTTTAAGGCCAGAGTTTGCAGAAAGTACCTACTTCTTATATAAGGCTACAGGAGAC CCTTACTACCTTGAAGTAGGGAAAACACTTATTGAAAATTTGAATAAGTATGCTCGAGTGCCTTGCGGGT TTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGGACAGAATGGATTCATTCTTCTTGGCTGAAAT GTTTAAATACCTGTACCTGTTATTTGCTGATAAAGAGGACATCATTTTTGACATAGAAGACTATATCTTT ACAACAGAAGCTCATCTGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCATCTCAAAGAAGAACACAA CCTCAGAATACACAGAACTGGATGATAGTAATTTTGATTGGACTTGTCCAAACACTCAGATTCTTTTTCC TAATGATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGTCCGAGA GGCATCATCAGAGTAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCAGAGATTTTATGG CCACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGCTGCTAGTTCAATTGATGCTGAAGATGG GTTACGGTTCATGCAGGAGATGATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAGCTGCCTCCACGA GCTGTCCAGATTATCTCCCACCCGTTTTTTGGCAGGGTCGTCTTAACTGCTGGACCAGCTCAGTTTGGGC TGGATCTATCTAAACACAAAGAGACACGAGGATTTGTTGCAAGCAGTAAACCATATAATGGTTGTTCAGA GCTCACTAACCCTGAGGCAGTGATGGGAAAAATTGCCTTGATACAAAGAGGACAGTGCATGTTTGCAGAA AAGGCACGCAACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGATCGATGACAACGAGGGGAGCAGTA GCGACACGGCCCCCCTGTTCCAGATGGCCGGCGATGGGAAGGACACAGACGACATCAAGATCCCCATGCT GTTCCTGTTCAGCAAGGAAGGCAGCATCATCCTGGACGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTC CTTTCTGACAAAGCGAGAGACCGAGCAGCCATATTAAAAGATCCCGAAATGGAAAATGAAGACCAGCCAT CTTCTGAAAATGATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCGCTTTCTCAGACAGTCGACTTGGC TGATAAGGAGAGCCCTGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCCATCGGACAGTGAAGAGGCT GCTGGCTTTGCCCCCTCTGAACAGATATCTGGGTCCACCGAAAACCACGAGACTACAAGCCTTGATGGTG AATGTACAGACTTAGATAACCAAGTTCAAGAACAATCAGAAACTGAGGAAGATTCCAGTCCTAATGTCAG CTGGGGTACAAAGGCCCAGCCTATAGACTCCATATTAGCAGACTGGAATGAAGACATAGAAGCATTTGAA ATGATGGAGAAGGATGAACTATGA
Translation (917 aa):
MSKAGGCRGCGCRVPQRASWSLVAATAALCLVLATSVCTAGAAPMSREEKQKLGNQVLEMFDHAYGNYME HAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDND VVVSVFETNIRVLGGLLGGHSLAIMLKEKGEHMQWYNDELLHMAKQLGYKLLPAFNTTSGLPYPRINLKF GIRKPEARTGTETDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSSNLVGVTINIHTG DWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHYDAIMRYISQPPLLLDVHIHKPMLNARTWMD ALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHNFLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGD PYYLEVGKTLIENLNKYARVPCGFAAMKDVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIF TTEAHLLPLWLSTTNRSISKKNTTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPR GIIRVEESFRSGAKPPLRARDFMATNPEHLEILKKMGAASSIDAEDGLRFMQEMIELSSQQQKEQQLPPR AVQIISHPFFGRVVLTAGPAQFGLDLSKHKETRGFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAE KARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIREHEQVEVL LSDKARDRAAILKDPEMENEDQPSSENDSQNQSAEQMLSLSQTVDLADKESPEHPADSHSEASPSDSEEA AGFAPSEQISGSTENHETTSLDGECTDLDNQVQEQSETEEDSSPNVSWGTKAQPIDSILADWNEDIEAFE MMEKDEL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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