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Report for CCDS78880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78880.1 Public Mus musculus 10 Slc17a8 23 108 98 CCDS HistoryNCBI Gene:216227Re-query CCDS DB by CCDS ID:78880.1Re-query CCDS DB by GeneID:216227See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105295.1 ENSMUSP00000100932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105295.1Link to Ensembl Protein Viewer:ENSMUSP00000100932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105295Re-query CCDS DB by Protein ID:ENSMUSP00000100932
Original member Current member NCBI NM_001310710.1 NP_001297639.1 Accepted alive Link to Nucleotide Sequence:NM_001310710.1Link to Protein Sequence:NP_001297639.1Re-query CCDS DB by Nucleotide ID:NM_001310710Re-query CCDS DB by Protein ID:NP_001297639Link to BLAST:NP_001297639.1

Chromosomal Locations for CCDS 78880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 89576316 89576657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89577901 89578028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89583396 89583506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89589496 89589628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89591146 89591295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89592022 89592161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89592876 89592962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89597445 89597532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89598637 89598711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTTTATCCCTTCTGCGGCGAGGGTGCATTACGGCTGTGTCATGGGTGTGAGGATTTTGCAGGGTCTGG
TGGAGGGTGTGACCTACCCTGCCTGCCATGGGATGTGGAGTAAGTGGGCGCCTCCCCTGGAGAGAAGCCG
TCTAGCCACGACTTCCTTCTGTGGTTCCTATGCTGGGGCAGTTGTTGCTATGCCTCTTGCAGGGGTATTG
GTGCAGTACATTGGCTGGGCCTCTGTCTTTTACATCTACGGTATGTTTGGGATTATTTGGTATATGTTTT
GGCTGCTGCAGGCTTATGAGTGCCCGGCAGCTCACCCAACAATATCCAATGCAGAAAGGACCTACATAGA
GACAAGCATAGGAGAAGGGGCCAACTTGGCCAGTCTGAGCAAATTCAACACACCATGGAGAAGGTTTTTC
ACATCCTTGCCTGTCTATGCCATCATTGTGGCAAACTTCTGTAGAAGCTGGACCTTCTATTTGCTCCTGA
TAAGTCAGCCAGCTTACTTTGAGGAGGTCTTTGGATTTGCAATAAGTAAGGTGGGTCTCTTGTCAGCTGT
CCCACACATGGTGATGACAATCGTGGTGCCCATCGGAGGACAACTGGCTGATTATTTAAGAAGCCGAAAG
ATTTTGACCACAACCGCTGTCAGAAAGATCATGAATTGTGGAGGCTTTGGCATGGAGGCAACCTTGCTCC
TGGTGGTTGGATTTTCCCATACCAAAGGAGTGGCTATCTCCTTCCTGGTGCTTGCTGTAGGATTTAGTGG
CTTTGCTATTTCAGGCTTCAATGTCAACCACCTGGACATTGCTCCACGCTATGCCAGCATCCTCATGGGG
ATCTCAAATGGTGTGGGGACCCTCTCTGGAATGGTTTGTCCCCTCATTGTTGGTGCAATGACTAAGCACA
AGACCCGGGAGGAGTGGCAGAATGTGTTCCTCATAGCAGCGCTGGTACACTACAGCGGAGTCATCTTCTA
CGGGGTCTTCGCTTCTGGGGAAAAACAGGACTGGGCTGACCCAGAGAATCTCTCTGAGGACAAATGTGGA
ATCATTGACCAAGATGAGTTAGCTGAGGAGACAGAACTCAACCACGAGACTTTCGTAAGTCCCAGAAAGA
AGATGTCTTATGGAGCCACCACCCAGAATTGTGAGGTCCAGAAGACGGAGTGGAGACAACAGAGAGAATC
TGCCTTCGACGGGGAGGAGCCATTATCCTACCAGGCCGAAGGAGACTTCTCAGAAACATCCTAA

Translation (417 aa):
MFIPSAARVHYGCVMGVRILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVVAMPLAGVL
VQYIGWASVFYIYGMFGIIWYMFWLLQAYECPAAHPTISNAERTYIETSIGEGANLASLSKFNTPWRRFF
TSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRK
ILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMG
ISNGVGTLSGMVCPLIVGAMTKHKTREEWQNVFLIAALVHYSGVIFYGVFASGEKQDWADPENLSEDKCG
IIDQDELAEETELNHETFVSPRKKMSYGATTQNCEVQKTEWRQQRESAFDGEEPLSYQAEGDFSETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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