CCDS Report for Consensus CDS

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Report for CCDS78881.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
78881.1	Public	Mus musculus	10	Scyl2	23	108	98

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78881.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000092227.11	ENSMUSP00000089874.5	Accepted	alive
		NCBI	NM_001310704.2	NP_001297633.1	Accepted	alive

Chromosomal Locations for CCDS 78881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	89640469	89641116
10	89641991	89642110
10	89645462	89645554
10	89645677	89645743
10	89646759	89646859
10	89649965	89650083
10	89650828	89650960
10	89652943	89653056
10	89654104	89654226
10	89656708	89656884
10	89657810	89657935
10	89659239	89659355
10	89660135	89660356
10	89662316	89662465
10	89666717	89666861
10	89669645	89669802
10	89678278	89678454

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGAGTCCATGCTTAATAAACTGAAGAGTACTGTTACAAAAGTAACAGCTGATGTCACCAGTGCTGTGA TGGGAAATCCCGTCACTAGAGAGTTTGATGTTGGTCGACACATTGCCAGTGGTGGCAATGGGTTGGCATG GAAGATTTTTAATGGCACAAAGAAGTCAACAAAACAGGAAGTGGCTGTTTTTGTCTTTGATAAAAAGCTG ATTGACAAATATCAAAAATTTGAAAAGGATCAAATCATTGATTCTTTAAAACGCGGAGTCCAACAGCTAA CCCGACTACGACACCCTCGACTTCTTACTGTCCAGCATCCTTTAGAAGAGTCAAGGGATTGCTTGGCATT TTGTACAGAACCAGTTTTTGCCAGTTTAGCCAATGTTCTTGGTAACTGGGAAAATCTACCCTCTTCAATA TCTCCAGACATCAAGGATTATAAACTTTATGATGTAGAAACTAAGTATGGTTTGCTTCAGGTTTCTGAAG GATTGTCATTTTTGCATAGCAGTGTAAAAATGGTTCATGGAAATGTTACTCCTGAAAATGTCATTTTGAA TAAAAGCGGAGCCTGGAAAATAATGGGGTTTGACTTCTGTGTGTCATCAAGCAACCCTTCTGAACAGGAG CCTAAGTTTCCTTGTAAAGAGTGGGACCCAAACTTGCCATCATTGTGTCTTCCGAATCCTGAATACTTGG CTCCTGAATATATCCTGTCCGTGAGCTGTGAGACTGCCAGTGACATGTACTCGTTAGGAGCTGTTATGTA CGCCGTGTTTAATCAAGGGAGACCTATATTTGAAGTCAACAAGCAGGACATTTACAAGAGCTTCAGTAGA CAACTGGATCAGTTGAGTCGTTTAGGATCTAGTTCACTGACCAGTATACCCGAGGAAGTTCGTGAACACG TAAAACTGTTGTTAAATGTAACTCCAACCGTGAGACCCGATGCAGATCAAATGACAAAAATTCCCTTCTT TGATGATGTTGGTGCAGTAACACTTCAATATTTTGATACCTTATTCCAAAGAGATAATCTTCAGAAATCA CAGTTCTTCAAAGGATTGCCAAAGGTTCTACCAAAGCTGCCCAAGCGTGTCATTGTGCAGAGGATTTTAC CCTGTCTGACCTCAGAATTTGTCAACCCTGATATGGTACCTTTCGTTTTACCTAATGTTCTGCTCATTGC TGAGGAATGCACCAAAGAAGAATATATCAAATTAATTCTGCCTGAACTCGGTCCTGTATTCAAACAGCAG GAGCCAATCCAGATTTTGCTAATTTTTCTACAAAAAATGGATTTGCTGCTAACCAAAACCCCTCCTGATG AGATAAAGAACAGTGTCCTGCCCATGGTCTACAGAGCTCTGGAGGCTCCTTCCATTCAGATCCAGGAGCT CTGTCTAAACATCATTCCAACATTTGCAAATCTTATAGACTACCCGTCCATGAAAAACGCTTTGATTCCA AGAATTAAAAATGCCTGTTTACAAACGTCTTCCCTTGCTGTCCGTGTGAATTCATTAGTGTGCTTAGGGA AGATCCTGGAGTACCTGGATAAGTGGTTTGTGCTTGATGATATCCTACCCTTCTTACAGCAGATTCCCTC CAAGGAGCCTGCAGTCCTCATGGGGATTTTAGGTATTTATAAATGTACTTTTACTCATAAAAAATTGGGA ATCACCAAAGAGCAGCTGGCTGGGAAAGTCCTGCCTCATCTCATCCCCCTGAGCATTGAAAACAACCTCA ACCTCAATCAGTTCAGCTCCTTCATTGCCGTCATAAAGGAGATGCTGAGCAGACTGGAGTCTGAGCATAG GACGAAGCTAGAGCAGCTTCACGTGATGCAGGAGCAGCAGAGGTCTTTGGACATAGGGAATCAAATGAGC ACTTCTGAGGAGACAAAAGTTGCACATTCTGGAAGTCAGATTGATAAGGTCTTTAACAACATTGGAGCGG ACCTTCTAAGTGGCAGTGAATCAGAAAATAGAGAAGATGGGATGCAGGGAAAACAGAAAAGGGGGTCACT AACACTTGAAGAAAAACAGAAATTAGCGAAAGAACAGGAGCAGGCACAGAAGCTGAAAAGCCAGCAGCCT CTTAAGCCCCAGGTCCACACTCCCATCGCTCCCATTAAACAGACTAAGGACTTGACAGACACACTGATGG AAAACATGTCGTCTCTGACCAGCCTTTCTGTTAGCACTCCTAAGATTTCTGCTTCAAGTACCTTCACCCC AGTTCCTTCCACGGGCCTCGGCATGATGTTTTCAACACCCATTGATAATACAAAGAGAAATTTGACAAAT GGCCTGAATGCCAACATGGGCTTTCAGACTTCAGGGTTCAGCATGCCAGTCAATCCAAACCAGAACTTCT TCAGTGGGACGGGCACAGCTGGCGTGACCACCATGAGTCTGGGAGCACCTCCCACTATGTCAAACTTTAG CCCTTTGACTATTCCTCCTGCTAGCGTGAAGCAGCCTCAACAGAGACCAACCGATATGTCTGCCCTCAAT AATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATGAACCAGCTATCCCAACAGAAACCAAATCAGTGGC TGAATCAGTTTGCACCTCCTCAAGGCTCTCCTGTCATGGGCAGCGCAGCCATGGGCACACAGGGGAATGT GATGGGGCAGGCTGCCTTTGGTATGCAGGGCAACCCTTTCTTCAACCCACAGAACTTTGCACAGCCACCA CCCACCACTATGACCAGCAGCAGTTCAGCTAGCAACGATTTGAAAGATCTTTTTGGGTGA
Translation (929 aa):
MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKL IDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSSI SPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNVTPENVILNKSGAWKIMGFDFCVSSSNPSEQE PKFPCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGAVMYAVFNQGRPIFEVNKQDIYKSFSR QLDQLSRLGSSSLTSIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKS QFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYIKLILPELGPVFKQQ EPIQILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIP RIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLG ITKEQLAGKVLPHLIPLSIENNLNLNQFSSFIAVIKEMLSRLESEHRTKLEQLHVMQEQQRSLDIGNQMS TSEETKVAHSGSQIDKVFNNIGADLLSGSESENREDGMQGKQKRGSLTLEEKQKLAKEQEQAQKLKSQQP LKPQVHTPIAPIKQTKDLTDTLMENMSSLTSLSVSTPKISASSTFTPVPSTGLGMMFSTPIDNTKRNLTN GLNANMGFQTSGFSMPVNPNQNFFSGTGTAGVTTMSLGAPPTMSNFSPLTIPPASVKQPQQRPTDMSALN NLFGPQKPKVSMNQLSQQKPNQWLNQFAPPQGSPVMGSAAMGTQGNVMGQAAFGMQGNPFFNPQNFAQPP PTTMTSSSSASNDLKDLFG

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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