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Report for CCDS78942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78942.1 Public Mus musculus 11 Clk4 23 108 98 CCDS HistoryNCBI Gene:12750Re-query CCDS DB by CCDS ID:78942.1Re-query CCDS DB by GeneID:12750See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109111.1 ENSMUSP00000104739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109111.1Link to Ensembl Protein Viewer:ENSMUSP00000104739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109111Re-query CCDS DB by Protein ID:ENSMUSP00000104739
Original member Current member EBI ENSMUST00000109113.7 ENSMUSP00000104741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109113.7Link to Ensembl Protein Viewer:ENSMUSP00000104741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109113Re-query CCDS DB by Protein ID:ENSMUSP00000104741
Original member Current member NCBI NM_001304744.1 NP_001291673.1 Accepted alive Link to Nucleotide Sequence:NM_001304744.1Link to Protein Sequence:NP_001291673.1Re-query CCDS DB by Nucleotide ID:NM_001304744Re-query CCDS DB by Protein ID:NP_001291673Link to BLAST:NP_001291673.1
Original member Current member NCBI NM_001362539.1 NP_001349468.1 Accepted alive Link to Nucleotide Sequence:NM_001362539.1Link to Protein Sequence:NP_001349468.1Re-query CCDS DB by Nucleotide ID:NM_001362539Re-query CCDS DB by Protein ID:NP_001349468Link to BLAST:NP_001349468.1
Original member Current member NCBI NM_001362540.1 NP_001349469.1 Accepted alive Link to Nucleotide Sequence:NM_001362540.1Link to Protein Sequence:NP_001349469.1Re-query CCDS DB by Nucleotide ID:NM_001362540Re-query CCDS DB by Protein ID:NP_001349469Link to BLAST:NP_001349469.1
Original member Current member NCBI NM_001362541.1 NP_001349470.1 Accepted alive Link to Nucleotide Sequence:NM_001362541.1Link to Protein Sequence:NP_001349470.1Re-query CCDS DB by Nucleotide ID:NM_001362541Re-query CCDS DB by Protein ID:NP_001349470Link to BLAST:NP_001349470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291673.1 301 O35493-2 301 100% 0 0
NP_001349468.1 301 O35493-2 301 100% 0 0
NP_001349469.1 301 O35493-2 301 100% 0 0
NP_001349470.1 301 O35493-2 301 100% 0 0

Chromosomal Locations for CCDS 78942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51273625 51273626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51275211 51275327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51275412 51275578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51275770 51275864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51276118 51276247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51277853 51277935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51280358 51280437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51281109 51281199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51281277 51281417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGATGGCTTACATGTAGCAGTGAAAATTGTAAAAAATGTAGGCCGTTACCGGGAGGCAGCTCGTTCTG
AAATCCAAGTATTGGAGCACTTGAACAGCACTGACCCCAACAGTGTCTTCCGATGCGTCCAGATGCTAGA
GTGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAGCTGCTGGGACTTAGTACCTATGATTTTATT
AAAGAAAATAGTTTTCTGCCATTTCAAATTGATCACATCAGGCAAATGGCTTATCAGATCTGCCAGTCTA
TAAATTTTTTACATCATAATAAATTAACACACACGGACCTAAAACCTGAAAATATTTTATTTGTGAAGTC
TGACTATGTAGTCAAATACAATTCTAAAATGAAACGAGATGAGCGCACATTGAAAAACACAGATATCAAA
GTTGTTGATTTTGGAAGTGCAACATATGACGACGAACATCATAGTACTTTGGTGTCCACAAGGCACTACA
GGGCTCCAGAGGTCATTTTGGCTCTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGCTGCATTCT
TATTGAGTACTACCTTGGGTTCACAGTCTTTCAGACCCACGATAGTAAAGAGCACCTGGCAATGATGGAG
CGGATCTTAGGACCCATCCCAGCACATATGATCCAGAAGACAAGGAAACGCAAGTATTTCCACCATAACC
AGCTAGATTGGGACGAGCATAGTTCAGCTGGGAGATATGTTAGGAGACGCTGCAAGCCGTTAAAGGAATT
TATGCTGTGTCATGACGAAGAGCATGAGAAGCTGTTTGACCTGGTTCGAAGAATGTTGGAGTATGACCCA
GCGAGAAGGATCACCTTGGATGAAGCATTGCAGCACCCTTTCTTTGACTTATTAAAAAGGAAATGA

Translation (301 aa):
MDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFI
KENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIK
VVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMME
RILGPIPAHMIQKTRKRKYFHHNQLDWDEHSSAGRYVRRRCKPLKEFMLCHDEEHEKLFDLVRRMLEYDP
ARRITLDEALQHPFFDLLKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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