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Report for CCDS79159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79159.1 Public Mus musculus 12 Tmem196 23 108 98 CCDS HistoryNCBI Gene:217951Re-query CCDS DB by CCDS ID:79159.1Re-query CCDS DB by GeneID:217951See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183694.7 ENSMUSP00000138921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183694.7Link to Ensembl Protein Viewer:ENSMUSP00000138921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183694Re-query CCDS DB by Protein ID:ENSMUSP00000138921
Original member NCBI NM_001294146.1 NP_001281075.1 Updated not alive Link to Nucleotide Sequence:NM_001294146.1Link to Protein Sequence:NP_001281075.1Re-query CCDS DB by Nucleotide ID:NM_001294146Re-query CCDS DB by Protein ID:NP_001281075
Current member NCBI NM_001294146.2 NP_001281075.1 Accepted alive Link to Nucleotide Sequence:NM_001294146.2Link to Protein Sequence:NP_001281075.1Re-query CCDS DB by Nucleotide ID:NM_001294146Re-query CCDS DB by Protein ID:NP_001281075Link to BLAST:NP_001281075.1

Chromosomal Locations for CCDS 79159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 119946474 119946638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120011248 120011304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120014748 120015002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120018510 120018581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGTGCACCAGCGGCCAGATCATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGATAGGGCTGGGGGTGT
CCAGCGTGGCCGTGGGGGCGGTCAGCTTCAGCCTGGCTCTCCGAGAGCACACGCCGCAGCTCGGAGACTC
GTCCCCGGTATGGAGCGGGGTGTGTTTTCTTCTATGTGGCATATGTGGAATACTGTGCGCCAAAAAAAAG
TCAGGACTTGTCATGATCCTCTTTTCAGCGTGCTGTATCTGTGGACTCATTGGAGGCATCCTGAATTTTC
AGTTTCTTCGGGCAGTCACAAAAAAGACCTCCTCCCTGTACCCACTGCATCTCGCTTCCATGTCTTTGGC
ATGTATCGGCATTGGGGGCTGCACTGTCTCCTCTTGGCTCACTTGTCGTCTAGCCAGCTATGAGCAAAGG
AGGATGTTCTCAGAAAGGGAACATTCCCTGCATCACTCTCATGAAATGGCTGAGAAAGAAATGACAGACA
ACATGAGTAATGGAGCACCGCAACTGATGTTTAATGGAAGAGTACAATCAATGTTTTAA

Translation (182 aa):
MCTSGQIIGSLLVLSVLEIGLGVSSVAVGAVSFSLALREHTPQLGDSSPVWSGVCFLLCGICGILCAKKK
SGLVMILFSACCICGLIGGILNFQFLRAVTKKTSSLYPLHLASMSLACIGIGGCTVSSWLTCRLASYEQR
RMFSEREHSLHHSHEMAEKEMTDNMSNGAPQLMFNGRVQSMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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