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Report for CCDS79379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79379.1 Public Mus musculus 15 Tigd5 23 108 98 CCDS HistoryNCBI Gene:105734Re-query CCDS DB by CCDS ID:79379.1Re-query CCDS DB by GeneID:105734See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192937.1 ENSMUSP00000141473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192937.1Link to Ensembl Protein Viewer:ENSMUSP00000141473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192937Re-query CCDS DB by Protein ID:ENSMUSP00000141473
Original member Current member NCBI NM_178646.4 NP_848761.2 Accepted alive Link to Nucleotide Sequence:NM_178646.4Link to Protein Sequence:NP_848761.2Re-query CCDS DB by Nucleotide ID:NM_178646Re-query CCDS DB by Protein ID:NP_848761Link to BLAST:NP_848761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848761.2 642 Q499M4-1 642 100% 0 0

Chromosomal Locations for CCDS 79379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75909791 75911719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGTACCCCGCGAGCCCTCCGGCCGGCCCAGCCCTGCACCCGGTCCCGCATCGCGCTCGTCTTCCCCAGC
CACGGTGCCTTGCTGAGCCGCCGCGATCGCCGGCGCCCGGCCCGGGTTCCACGGCGCGCCCGCCGCCGCC
CCCAGCGCCCGGGCCGCGGCCCCGGGTGGCCGTGAAGATGACTTTCCGCAAGGCCTACTCAATCAAAGAC
AAGCTGCAAGCCATCGAGCGCGTCAAGGGCGGTGAGCGGCAGGCCAGCGTGTGCCGCGACTTCGGCGTGC
CAGGCGGCACTCTGCGCGGCTGGCTCAAGGACGAGCCCAAGCTGCGCTGGTTTTTGGACCAGCTGGGTGG
AGAAGTGGGCACGCAGCGCAAGAAGATGCGTCTGGCCAACGAGGAGGAGATCGACCGCGCCGTCTACTCG
TGGTTCCTCACCTTGCGCCAGCACGGTGTGCCGCTATCCGGGCCAGTTATCCAAGCGCAGGCTGAGGCCT
TTGCTCGCCAGATCTACGGCCCCGAGTGTACCTTCAAGGCTAGCCACGGCTGGTTCTGGCGCTGGCAGAA
GCGCCATGGCATCTCTAGCCAGCGCATCTATGGTGAGGCTGAGTCCCCGGTCGCAGGCCCCGCGCCTGTC
AAAGAGGAGCCGGCGCAGTCACCAGGCGCAGTTCTCGTACCTGACGGCGCGCCAGCCACTCTACCCCACT
CCGAGGGCGGCTATGGCGACGAGCAGATCTACAATGCTAACGTTACTGGTCTCTATTGGAGGTTACTTCC
GGAGCAGGCCTCAACTCCGGGCACTGGGGACTCCAAAGAGCCTGGTGGGTGCAGCCGACGCTGGCGCAGT
GACCGAGTGACAGTACTGCTGGCCGCCAACCTGACGGGCAGCCACAAGCTGAAACCACTAGTCATCGGGC
AGCTACCGGACCCACCCAGCCTGCGTCACCACAACCAGGACAAGTTCCCGGCCTCCTACCGCTACAGTCC
GGATGCCTGGCTCAGTCGCCCGCTTCTTCGGGGCTGGTTCTTCGAGGAATTTGTCCCTGGCGTCAAGCGC
TACCTGCGCCGAAGCTGCCTGCAACAGAAGGCTGTGCTGCTGGTGGCCCATCCACCCTGTCCGAGTTGGG
CCACTAGCATGCCTCCCCTGGAGGAGAGCGAGGAGACTCCCAGGCAGTGCCAGCCTGAGCTCCTTGGGTC
CCCAGAGGAACTTCAAACACCTGATGGTGCAGTTCGAGTGCTCTTCTTATCCAAGGGCACCAGCCGAGCA
CACATCCCTGCACCGTTGGAGCACGGCGTGGTGGCAGCCTTCAAGCATTTGTACAAACGCGAGCTCCTGC
GGCTTGCTGTGTCTTGTGCCAGTGGCTCCCCTCTGGACTTCATGAGAAGCTTCGTTCTCAAGGACATGCT
GTACCTGGCTGGCCTCTCTTGGGACTTGGTCCAGGCAGGCAGCATAGAGCGCTGCTGGCTGCTGGGTCTG
CGAGCAGCCTTTGAGCCTGGGCAGCAGCCAGCTCACCAGGTAGAGGAGACTGCCGAACACAGCAGGGTGC
TCAGTGACCTCACACATCTGGCAGCTCTGGCTTACAAGCGCCTGGCACCTGAAGAGGTGGCCCAGTGGCT
ACACCTGGATGATGATGGAGGCCTTCCGGAAGGCTGCAGAGAAGAGGTGGCCCCCGCTGCTCCTCCATCC
CCAGCTAGCCTGCCCTCTAGCATCGGGGCTGGAGAGGAGGAGGAGGAGGCCACCGAACAAGGAGGAGTGT
TGGTACCTACTGCTGGGGAAGCTGTCTGGGGACTAGAGACAGCTCTGAGGTGGCTAGAGAGCCAGGATCC
CAGAGAAGTGGGGCCGCTGAGGCTTGTGCAGCTACGTTCTCTCATTACCATGGCACGGAGGCTTGGGGGT
ATTGGGCCCTCAGCTGTAACTTCTGATGATGGTGTGTGA

Translation (642 aa):
MYPASPPAGPALHPVPHRARLPQPRCLAEPPRSPAPGPGSTARPPPPPAPGPRPRVAVKMTFRKAYSIKD
KLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLDQLGGEVGTQRKKMRLANEEEIDRAVYS
WFLTLRQHGVPLSGPVIQAQAEAFARQIYGPECTFKASHGWFWRWQKRHGISSQRIYGEAESPVAGPAPV
KEEPAQSPGAVLVPDGAPATLPHSEGGYGDEQIYNANVTGLYWRLLPEQASTPGTGDSKEPGGCSRRWRS
DRVTVLLAANLTGSHKLKPLVIGQLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKR
YLRRSCLQQKAVLLVAHPPCPSWATSMPPLEESEETPRQCQPELLGSPEELQTPDGAVRVLFLSKGTSRA
HIPAPLEHGVVAAFKHLYKRELLRLAVSCASGSPLDFMRSFVLKDMLYLAGLSWDLVQAGSIERCWLLGL
RAAFEPGQQPAHQVEETAEHSRVLSDLTHLAALAYKRLAPEEVAQWLHLDDDGGLPEGCREEVAPAAPPS
PASLPSSIGAGEEEEEATEQGGVLVPTAGEAVWGLETALRWLESQDPREVGPLRLVQLRSLITMARRLGG
IGPSAVTSDDGV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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