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Report for CCDS79492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79492.1 Public Mus musculus 16 Erg 23 108 98 CCDS HistoryNCBI Gene:13876Re-query CCDS DB by CCDS ID:79492.1Re-query CCDS DB by GeneID:13876See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233664.1 ENSMUSP00000156927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233664.1Link to Ensembl Protein Viewer:ENSMUSP00000156927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233664Re-query CCDS DB by Protein ID:ENSMUSP00000156927
Original member Current member NCBI NM_001302154.1 NP_001289083.1 Accepted alive Link to Nucleotide Sequence:NM_001302154.1Link to Protein Sequence:NP_001289083.1Re-query CCDS DB by Nucleotide ID:NM_001302154Re-query CCDS DB by Protein ID:NP_001289083Link to BLAST:NP_001289083.1

Chromosomal Locations for CCDS 79492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 95360806 95361326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95368652 95368699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95369322 95369378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95377301 95377372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95379112 95379192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95380068 95380271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95389894 95390045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95409735 95409952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 95459228 95459245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCCAGCACTATTAAGGAGGCCTTGTCAGTTGTGAGCGAGGACCAGTCACTATTTGAGTGTGCCTACG
GAACGCCACACCTGGCTAAGACAGAGATGACCGCATCCTCTTCCAGTGACTATGGCCAGACATCCAAGAT
GAGTCCCAGAGTCCCTCAGCAGGACTGGCTGTCTCAAGCCCCAGCCAGGGTCACCATCAAGATGGAGTGC
AACCCTAGTCAGGTGAATGGTTCCAGGAACTCACCTGATGAGTGCAGTGTGAACAAAGGTGGGAAGATGG
TGGGCAGCCCGGATACTGTGGGGATGAGCTACGGCAGCTACATGGAGGAGAAGCATGTGCCGCCTCCCAA
TATGACCACAAATGAGCGCAGAGTGATCGTCCCTGCAGATCCTACTCTGTGGAGCACAGACCATGTCCGA
CAGTGGCTGGAGTGGGCGGTGAAAGAATATGGCCTCCTCGATGTGGACGTCTTACTATTTCAGAATATCG
ATGGGAAGGAGCTGTGCAAGATGACAAAGGATGACTTCCAGCGGCTCACGCCGAGCTACAATGCCGACAT
TCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCCCTTCCACATCTGACTTCCGATGACGTTGATAAG
GCTTTACAAAACTCTCCACGGTTAATGCATGCCAGAAACACAGGGGGTGCAGCTTTTATTTTCCCAAATA
CTTCAGTATATCCCGAAGCTACGCAAAGAATTACAACTAGGCCAGCTGCTCAGCCATCTCCCTCTGCAGT
GCCCAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTACCAGATCCTGGGACCGACCAGTAGCCGCCTT
GCTAATCCAGGTAGTGGCCAGATCCAGCTGTGGCAGTTCCTGCTCGAACTCCTGTCAGACAGCTCCAACT
CCAACTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAGATGACAGACCCGGACGAGGTGGCTCGGCG
CTGGGGGGAGAGGAAGAGCAAGCCCAACATGAACTATGACAAGCTCAGCCGCGCCCTCCGCTACTACTAC
GACAAAAACATCATGACCAAGGTGCACGGGAAGCGCTACGCCTACAAGTTTGACTTCCACGGGATTGCCC
AGGCCCTGCAGCCCCACCCTCCTGAGTCGTCCCTGTACAAGTACCCCTCCGACCTGCCATACATGGGCTC
CTATCACGCCCACCCCCAGAAGATGAACTTTGTGTCTCCCCACCCTCCCGCTCTCCCAGTCACATCTTCC
AGTTTCTTTGCTTCCCCGAACCCATACTGGAATTCACCGACTGGGGGCATCTACCCGAACACTAGGCTCC
CAGCCAGCCATATGCCCTCTCACCTGGGCACCTACTACTAG

Translation (456 aa):
MASTIKEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQAPARVTIKMEC
NPSQVNGSRNSPDECSVNKGGKMVGSPDTVGMSYGSYMEEKHVPPPNMTTNERRVIVPADPTLWSTDHVR
QWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDK
ALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRPAAQPSPSAVPKTEDQRPQLDPYQILGPTSSRL
ANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY
DKNIMTKVHGKRYAYKFDFHGIAQALQPHPPESSLYKYPSDLPYMGSYHAHPQKMNFVSPHPPALPVTSS
SFFASPNPYWNSPTGGIYPNTRLPASHMPSHLGTYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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