NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79900.1 Public Mus musculus 3 Afg2a 23 108 98 CCDS HistoryNCBI Gene:57815Re-query CCDS DB by CCDS ID:79900.1Re-query CCDS DB by GeneID:57815See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198968.1 ENSMUSP00000143349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198968.1Link to Ensembl Protein Viewer:ENSMUSP00000143349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198968Re-query CCDS DB by Protein ID:ENSMUSP00000143349
Original member Current member NCBI NM_001310473.1 NP_001297402.1 Accepted alive Link to Nucleotide Sequence:NM_001310473.1Link to Protein Sequence:NP_001297402.1Re-query CCDS DB by Nucleotide ID:NM_001310473Re-query CCDS DB by Protein ID:NP_001297402Link to BLAST:NP_001297402.1

Chromosomal Locations for CCDS 79900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37420341 37420500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37424511 37424635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37426089 37426246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37430046 37430104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37431633 37432277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37433138 37433267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37433639 37433695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37436642 37436765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37439101 37439356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37448408 37448562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37451643 37451852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37456775 37456828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37458321 37458400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37464532 37464658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37528158 37528322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37529983 37530006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2529 nt):
ATGTCTTCCAAGAAGAACCGAAAGCGGCAGAAGGAGGGCGCGGAGGGCGCCTCGCCCTCGCTCTCTGCGG
CTCCGTCCCGCTCAGGGACCTCGACTCCTTTCGCCCAGCCGAGCCCGGCGGCGCCGGGGATGCTGGTGGT
GACCAACTTCCTTGAGAAAGTAGATGGCAAAGTTCCTAAGACATTCCAGAATTCCCTTGTTCATCTTGGA
CTTAACACTATGAAGTCTGCAAACATATGTATAGGTCGGCCAGTGCTCCTTACCAGTTTGGATGGAAAGC
AGGAGGTTTATACAGCCTGGCCAGTTGCAGGATTTCCTGGAGGCAAGGTTGGCCTGAGTGAAATGGCACA
GAAGAATGTGGGTGTGAGAGCTGGTGAGACCATCCAGGTCCAGCCTCTTTTGGGTGCTGTGCTTCAGGCT
CAGGAAATGGACTTGGCGCTGAGTGACAAAGATAAGGAAATTAATGAAGAAGAACTGACTGGTTGTATTC
TGAGAAAACTAGATGGCAAGATTGTTTTACCAGGCAACTTTCTATACTGTACATTCTATGGACGACTCTG
CAAGTTACAAGTGTTGCAAGTGAAAGGGACAGATGGCACAACATTGGGAAAGCTTCAGAGTGCCTCTGGC
ACTGATGCCCAGGGAATGGCCTCTGAACATTCTAGCATGGAAAGCAGCGATGTGGATCTATCCTTCCAGC
TAAGCCAGTTAGATCTGAAAGAACCTCAGAGCCCATCATCACAGAGTACTCCCTGTAAACCCACTAATGA
CAGAACTGTGAATAAAGCTGGTGAAGTTTTGTTGGATGTCACACAGAGCCCTAGGGATGGAAGTGGACTT
GGACTAGAGGAAAGCACAGGTCTTAAGTGTAGTTTTGACTCATCCAAAGAAGGAAATACACAACCTGTCA
GTGAAGAGAAACTACTAAAACCTGCTAGTGCAGGGACAAAGAGCAATACTGATACTTTTTATTTTATTTC
TTCAACAACAAGAATCAATCTTCGAAAAATTTGTACAAATTCAAAAGAACAAGACAGTCAGTTCAAAGTA
ACTTATGACATGATTGGAGGCTTAAACAGTCAGCTGAAAGCAATAAGAGAAATAATTGAATTGCCTCTCA
AGCAGCCTGAACTTTTTAAGAGTTACGGAATTCCAGCGCCTAGAGGGTTATTACTCTATGGTCCTCCAGG
TACCGGAAAGACAATGATTGCTAGGGCTGTTGCTAATGAAGTTGGAGCTTATGTTTCTGTAATTAATGGT
CCTGAAATTATAAGCAAATTCTACGGTGAGACTGAAGCAAGGTTACGCCAGATATTTGCTGAAGCTACTC
TACGACACCCATCAATTATTTTTATTGATGAACTGGATGCACTTTGCCCTAAAAGAGAAGGAGCTCAGAG
TGAAGTGGAAAAGAGAGTTGTAGCTTCACTCTTAACATTGATGGATGGCATTGGCTCAGAAGGAAGTGAA
GGACGGGTATTAGTCCTTGGGGCCACAAATCGCCCTCAAGCACTAGATGCTGCACTCAGACGACCTGGGA
GATTTGATAAAGAGATTGAGATTGGCATTCCTAATGCCCAAGACCGGCTTGATATTCTCCAGAAACTACT
CCGAAGGGTGCCACATTTGCTCACTAAAGCTGAGCTTCTGAGGTTGGCAAATAATGCCCATGGTTATGTT
GGCGCAGACTTGAAAGCGTTGTGTAATGAGGCAGGTCTGCATGCCTTGCGAAGAGTCCTGAGGAAACAGC
CTAACCTCCCTGATAGCAAGGTGGCTGGCATGGTGAAGATTACTCTAAATGATTTCTTACAGGGGATGAA
TGACATCAGGCCTAGTGCTATGAGAGAGGTAGCAATTGATGTCCCAAATGTTTCCTGGTCAGATATTGGA
GGACTGGAAAATATCAAACTGAAATTGAAACAGGCTGTGGAATGGCCCTTGAAACATCCTAAGTCTTTCA
ACAGAATGGGTATTCAGCCACCCAAAGGAGTTCTCTTGTATGGGCCACCTGGATGCTCAAAAACAATGAT
AGCAAAAGCTTTGGCCAATGAAAGTGGGTTGAACTTTCTAGCTATAAAGGGGCCCGAATTAATGAATAAA
TATGTTGGTGAATCTGAAAGAGCAGTTAGAGAGATATTCCGTAAAGCAAGAGCAGTGGCACCGTCCATTA
TCTTTTTTGATGAACTTGATGCCCTGGCTGTTGAAAGGGGCAGTTCTTCAGGTGCCGGGAATGTTGCAGA
CCGTGTTTTGGCTCAGCTGTTAACGGAAATGGATGGGATTGAACAGCTAAAAAATGTGACAGTTTTGGCA
GCTACTAATCGCCCAGATAGAATAGACAAGGCTTTGATGAGGCCTGGAAGAATTGACAGGATCATTTATG
TGCCCTTACCGGACGCAGCAACCAGAAGGGAAATACTGAACCTGCAGTTCCACTCAATGCCGATCAGTAA
CGAGGTTGACCTGGATGAACTTGTCCTCCAAACTGACACCTACTCAGGAGCAGAGAGTGACAACAGTGCT
ACAGTTTGA

Translation (842 aa):
MSSKKNRKRQKEGAEGASPSLSAAPSRSGTSTPFAQPSPAAPGMLVVTNFLEKVDGKVPKTFQNSLVHLG
LNTMKSANICIGRPVLLTSLDGKQEVYTAWPVAGFPGGKVGLSEMAQKNVGVRAGETIQVQPLLGAVLQA
QEMDLALSDKDKEINEEELTGCILRKLDGKIVLPGNFLYCTFYGRLCKLQVLQVKGTDGTTLGKLQSASG
TDAQGMASEHSSMESSDVDLSFQLSQLDLKEPQSPSSQSTPCKPTNDRTVNKAGEVLLDVTQSPRDGSGL
GLEESTGLKCSFDSSKEGNTQPVSEEKLLKPASAGTKSNTDTFYFISSTTRINLRKICTNSKEQDSQFKV
TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVING
PEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSE
GRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYV
GADLKALCNEAGLHALRRVLRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIG
GLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNK
YVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLA
ATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAESDNSA
TV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH