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Report for CCDS79937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79937.1 Public Mus musculus 3 Fcrl1 23 108 98 CCDS HistoryNCBI Gene:229499Re-query CCDS DB by CCDS ID:79937.1Re-query CCDS DB by GeneID:229499See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194786.5 ENSMUSP00000142286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194786.5Link to Ensembl Protein Viewer:ENSMUSP00000142286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194786Re-query CCDS DB by Protein ID:ENSMUSP00000142286
Original member Current member NCBI NM_001310545.1 NP_001297474.1 Accepted alive Link to Nucleotide Sequence:NM_001310545.1Link to Protein Sequence:NP_001297474.1Re-query CCDS DB by Nucleotide ID:NM_001310545Re-query CCDS DB by Protein ID:NP_001297474Link to BLAST:NP_001297474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297474.1 324 Q8R4Y0-3 324 99.0741% 0 3

Chromosomal Locations for CCDS 79937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87376495 87376525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87381761 87381781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87384588 87384869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87385037 87385315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87385651 87385779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87386746 87386770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87389340 87389422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87389596 87389667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87390230 87390261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87401209 87401229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGCTACCTTGGCTCCTGCTACTGATCTGTGCTCTACCGTGTGAACCTGCTGGAATCTCTGATGTGAGCT
TGAAGACACGGCCCCCAGGAGGATGGGTGATGGAGGGAGACAAGCTGGTCCTCATCTGCTCGGTTGATAG
AGTCACTGGGAATATAACTTACTTCTGGTACAGAGGGGCCCTGGGTTTCCAACTGGAAACAAAGACACAA
CCTTCACTAACAGCAGAGTTTGAGATCAGTGACATGAAGCAGAGCGATGCTGATCAATATTACTGTGCGG
CTAACGATGGCCACGACCCTATCCCCAGTGAGCTGGTGAGCATCCACGTCAGAGTTCCAGTGTCTCGCCC
TGTCCTTACGTTTGGGGACTCTGGAACCCAGGCTGTGCTAGGGGACCTGGTGGAGCTTCACTGTAAGGCC
CTGAGAGGCTCACCCCCAATCTTCTACCAGTTTTATCATGAGAGCATCATCCTGGGGAACAGTTCAGCAC
CCTCTGGAGGAGGAGCATCCTTCAACTTCTCCCTGACTGCAGAACATTCTGGAAACTTCTCCTGTGAGGC
CAGCAATGGACAGGGTGCCCAACGAAGTGAGGTGGTGGCTCTCAACTTAACAGGTCTCTCCTTAGTGCCT
ACTGAGAATGGAATCAGCCATCTCTCCTTAGGACTCACTGGGTGGCTGCTTGGCTGTCTTAGCCTCATCA
CCATGGCCTTAATATTTTGCTACTGGCTCAAGAGAAAAATAGGAAGACAATCAGAGGATCCAGTCAGGAG
CCCTCCTCAGACTGTGCTCCAAGGATCCACCTACCCCAAACCCCCCGACTCAAGGCAGCCAGAGCCCCTG
TATGAGAACGTGAACGTTGTAAGTGGCAATGAAGTGTACTCTCTGGTGTACCACACCCCGCAGGTGCTGG
AACCAGCAGCAGCTCAGCATGTGAGGACACACGGAGTAAGTGAGGTCCAGGGAGGGATAGCCTGA

Translation (324 aa):
MLPWLLLLICALPCEPAGISDVSLKTRPPGGWVMEGDKLVLICSVDRVTGNITYFWYRGALGFQLETKTQ
PSLTAEFEISDMKQSDADQYYCAANDGHDPIPSELVSIHVRVPVSRPVLTFGDSGTQAVLGDLVELHCKA
LRGSPPIFYQFYHESIILGNSSAPSGGGASFNFSLTAEHSGNFSCEASNGQGAQRSEVVALNLTGLSLVP
TENGISHLSLGLTGWLLGCLSLITMALIFCYWLKRKIGRQSEDPVRSPPQTVLQGSTYPKPPDSRQPEPL
YENVNVVSGNEVYSLVYHTPQVLEPAAAQHVRTHGVSEVQGGIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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