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Report for CCDS79941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79941.1 Public Mus musculus 3 Paqr6 23 108 98 CCDS HistoryNCBI Gene:68957Re-query CCDS DB by CCDS ID:79941.1Re-query CCDS DB by GeneID:68957See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147948.7 ENSMUSP00000119656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147948.7Link to Ensembl Protein Viewer:ENSMUSP00000119656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147948Re-query CCDS DB by Protein ID:ENSMUSP00000119656
Original member Current member NCBI NM_001310597.1 NP_001297526.1 Accepted alive Link to Nucleotide Sequence:NM_001310597.1Link to Protein Sequence:NP_001297526.1Re-query CCDS DB by Nucleotide ID:NM_001310597Re-query CCDS DB by Protein ID:NP_001297526Link to BLAST:NP_001297526.1

Chromosomal Locations for CCDS 79941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88365053 88365103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88365675 88365802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88366905 88367001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88367219 88367369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88367689 88367963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCTCAGTCTCAAGATGCCTCAACTCCTTCGAGTCCATCAGGTCCCCCGGGTGTTTTGGGAAGAAGGCA
TCATGTCTGGCTACCGATGCCCCACAAGCTCTGCCTTAGACTGTGTTCTCAGCTCCTTCCAGATGACTAA
TGAGACGGTCAACATCTGGACTCACTTCCTGCCCACCTGGTTCCCAGAGCTAGAATACCCCGGGTTCAGC
AAGGCTCTCCGCACGGCTGCCTTTGCCTACCCCTTCTTGTTTGACAACCTCCCACTGTTCTACAGGCTGC
GGCTGTGTTGGGGCGGGGCCCACAGCTGTGGGCGGGACGCGCTGAGCTCCAACCATGGTTACCACCTCCT
CTGCGCTCTGCTCTCAGGCTTCCTTTTTGCAGCCCGTCTACCAGAGCGCCTGGCACCTGGGCGCTTCGAC
TATATTGGCCACAGCCACCAGCTGTTCCATATCTGTGCCGTGCTGGGCACCCACTTCCAGCTGGAAGCGG
TGCTGGCTGATATGGGATCCCGCAGAGCCTGGCTGGCCGTGCAGGAGCCCACCCTGGGTCTGGGGGCCAC
TGTAGCCACCTTGAGCCTGGCAGTGATTGGGAACCTGTTTATCATTGCTGCTTTCACGGCCTCCTTGCTG
CGGATGCCTGGACCCTGCCCCCTGCTGCAGGGTAGCCCACTGGAAGAGGGACTCCAAGCTAAACAACAGT
AA

Translation (233 aa):
MLSLKMPQLLRVHQVPRVFWEEGIMSGYRCPTSSALDCVLSSFQMTNETVNIWTHFLPTWFPELEYPGFS
KALRTAAFAYPFLFDNLPLFYRLRLCWGGAHSCGRDALSSNHGYHLLCALLSGFLFAARLPERLAPGRFD
YIGHSHQLFHICAVLGTHFQLEAVLADMGSRRAWLAVQEPTLGLGATVATLSLAVIGNLFIIAAFTASLL
RMPGPCPLLQGSPLEEGLQAKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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