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Report for CCDS79952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79952.1 Public Mus musculus 3 Pygo2 23 108 98 CCDS HistoryNCBI Gene:68911Re-query CCDS DB by CCDS ID:79952.1Re-query CCDS DB by GeneID:68911See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060061.10 ENSMUSP00000053672.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060061.10Link to Ensembl Protein Viewer:ENSMUSP00000053672.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060061Re-query CCDS DB by Protein ID:ENSMUSP00000053672
Original member NCBI NM_001293768.1 NP_001280697.1 Updated not alive Link to Nucleotide Sequence:NM_001293768.1Link to Protein Sequence:NP_001280697.1Re-query CCDS DB by Nucleotide ID:NM_001293768Re-query CCDS DB by Protein ID:NP_001280697
Current member NCBI NM_001293768.2 NP_001280697.1 Accepted alive Link to Nucleotide Sequence:NM_001293768.2Link to Protein Sequence:NP_001280697.1Re-query CCDS DB by Nucleotide ID:NM_001293768Re-query CCDS DB by Protein ID:NP_001280697Link to BLAST:NP_001280697.1

Chromosomal Locations for CCDS 79952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89430627 89430729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89431127 89431176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89432450 89433514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGAGGCAGCGGCCCCGCACCGCCCCCCGCGC
CGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTCTGCAAATGAAGAGCCCTGAAAAGAAGCGAAGAAA
GTCCAATACTCAGGGTCCTGCATATTCACATCTGACGGAGTTCGCCCCACCCCCGACCCCCATGGTGGAT
CATCTGGTCGCTTCTAACCCTTTTGAGGATGATTTCGGAGCCCCTAAAGTGGGGGGCGCAGGCCCTCCGT
TCCTCGGCAGTCCGGTGCCCTTTGGAGGCTTTCGTGTACAGGGGGGCATGGCAGGCCAGGTACCCCCAGG
CTACGGCACTGGAGGAGGAGGGGGTCCCCAGCCACTTCGTCGGCAGCCCCCTCCTTTTCCCCCCAACCCT
ATGGGTCCAGCTTTTAATATGCCCCCTCAGGGCCCTGGCTACCCGCCCCCTGGCAACATGAACTTTCCCA
GTCAACCCTTCAACCAGTCTCTGGGCCAAAACTTTAGCCCACCTGGTGGGCAGGTGATGCCAGGCCCAGT
AGGCGGATTTGGTCCCATGATCTCACCGACCATGGGACAGCCTCCTAGAGGGGAGCTGGGTCCTCCTCCT
CTCCCCCAACGCTTTACCCAACCAGGAGCACCTTTTGGTCCTTCTCTTCAGAGACCTGGTCAGGGACTCC
CCAGCCTGCCCCCCAACACAAGTCCCTTCCCTGGTCCAGACCCTGGTTTTCCTGGCCCTGGCGGTGAGGA
TGGTGGGAAGCCCTTGAACCCACCGGCTCCCACCGCCTTTCCCCAGGAGCCCCATTCGGGCTCCCCCGCT
GCTGCTGTCAATGGGAATCAGCCCAGTTTCCCCCCTAGCAGCAGTGGTCGAGGTGGGGGCACTCCAGATG
CCAACAGTCTGGCACCCCCCGGCAAGGCAGGGGGAGGCTCAGGGCCCCAGCCTCCCCCAGGCCTGGTGTA
CCCCTGCGGTGCCTGCCGTAGTGAGGTAAATGATGACCAGGATGCCATTCTGTGTGAGGCCTCCTGCCAG
AAGTGGTTTCACCGCGAGTGCACCGGCATGACCGAGAGTGCCTACGGCCTGCTGACCACCGAGGCCTCTG
CCGTCTGGGCCTGTGATCTTTGCCTCAAGACCAAGGAGATCCAGTCTGTCTACATCCGAGAGGGCATGGG
CCAGTTGGTGGCTGCTAACGATGGGTGA

Translation (405 aa):
MAASAPPPPDKLEGGSGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVD
HLVASNPFEDDFGAPKVGGAGPPFLGSPVPFGGFRVQGGMAGQVPPGYGTGGGGGPQPLRRQPPPFPPNP
MGPAFNMPPQGPGYPPPGNMNFPSQPFNQSLGQNFSPPGGQVMPGPVGGFGPMISPTMGQPPRGELGPPP
LPQRFTQPGAPFGPSLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAPTAFPQEPHSGSPA
AAVNGNQPSFPPSSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQ
KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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