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Report for CCDS79976.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79976.2 Public Mus musculus 3 Cgn 23 108 98 CCDS HistoryNCBI Gene:70737Re-query CCDS DB by CCDS ID:79976.2Re-query CCDS DB by GeneID:70737See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 79976.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107272.6 ENSMUSP00000102893.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107272.6Link to Ensembl Protein Viewer:ENSMUSP00000102893.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107272Re-query CCDS DB by Protein ID:ENSMUSP00000102893
Original member Current member NCBI NM_001293727.2 NP_001280656.2 Accepted alive Link to Nucleotide Sequence:NM_001293727.2Link to Protein Sequence:NP_001280656.2Re-query CCDS DB by Nucleotide ID:NM_001293727Re-query CCDS DB by Protein ID:NP_001280656Link to BLAST:NP_001280656.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280656.2 1183 P59242-2 1183 99.7464% 0 3

Chromosomal Locations for CCDS 79976.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94761360 94761501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94761774 94761937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94762559 94762667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94762982 94763100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94763188 94763271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94764462 94764551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94765499 94765660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94767117 94767287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94769160 94769417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94769962 94770168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94770493 94770702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94773128 94773260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94773497 94773645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94774203 94774415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94774900 94775032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94776109 94776236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94777994 94778065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94778201 94778270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94778379 94778479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94779151 94779987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3552 nt):
ATGGCTGATCCCCGGGGCCCCGTAGACCATGGAGTTCAAATTCGATTTATTACAGAGCCAGAGGGTGCTA
CTGAAATGGGCACCCTTCGTCGTAGTGGGCGGCGCCCTGCAAGGGATGCAAGAGCCAGTACCTATGGGGT
CGCTGTGCGTGTGCAGGGCATCGCCGGGCAACCGTTTGTGGTTCTTAACAGTGGAGAGAAAGGGACTGAC
TCCTTTGGGGTCCAGATCAAAGGGGGCAACAACCGGGGGTCCCCAGGTGCACTGAGCTCCGATTCAGAGC
TCCCCGAAAACCCCTACTCTCAAGTCAAGGGACGCCCTGCCACTTCTCGGAGCAGCACATCTGATGAGGA
GCCCAAGGACCACTTGAATGGAAAACTGATCCGTTCCCAGTCGCAAGCCTCTCTGACCGGGCTTGCCTTT
ATGAGTCCTAGTAATAGGAGCACCAGCTTGCTGGAACTAGCCCCTAAACCGACTTCCTCGATTAACACCA
TTGACACTGCCCCCTTGTCTTCAGTGGACTCGCTCATCAACAAGTTTGATAGTCAGAAGGGGGGGCAGGT
CCGGGGTCGCACTGGGCGCCGCACAAGGACACTTCCCCACGAACAGCGCAAGCGGAGCCAGAGTCTGGAC
AGCAGGCTCCCACGGGATACACGTGAGGAACGGGAGCACCAGTCCGCTAACCACTGGACCCGCGGCACAA
AGTATGACAACCATGTGGACAGTTCAAAGAACCCATCGCAGAAGCAGAGCCCGTTCAGCAGCTTCAGCCG
TTCGCGTCAGACTCAAGACTGGGTGCTTCAGAGTTTTGAGGAGACACGGGATCCAGCCATGGTGCAGTTC
AAATCAACTCCAGACCTTCTCAGAGACCAGAGAGAGACAGCGCCACCAGGCAGTGCGGACCATGTGAAGG
CCACCATCTATGGCATCCTAAGGGAGGGAAGCTCGGAGAGTGAGGCATCTGTGAGGAGGAAAGTTAGTTT
GGTGCTGGAGCAAATGCAGCCTCTGGGGGCCCTGGCAGGACAGGCTGAGCTTACCCGAAAAATGGAGGAA
CTTCAGAAGAAGCTGGATGAGGAGGTGAAGAAGCGGCAGAAGCTAGAACCATCCAGGGTTGGGCTGGAGA
GGCAGCTGGAGGAGAAGGCTGAAGAGTGCCACCGACTGCAGGAGTTGCTGGAGAGGAGAAAGGGGGAGGT
CCAGCAGAGCAGCAAGGAACTTCAGAACATGAAGCTCCTGCTAGGCCAGGAAGAAGGACTACGGCATGGG
CTGGAGGCCCAGGTGAAGGAGCTACAGCTTAAGCTCAAGCATAGCCAGAGTCCCGATTCTGGAAAGGAAA
GTCTCCTAAAGGACTTGTTAGACACCCGGGAACTTCTAGAAGAACTCTTAGAGGGCAAACAACGAGTAGA
GGAGCAGCTCAGGCTGAGGGAACGGGAGCTGACAGCCCTGAAGGGGGCCCTGAAAGAGGAGGTGGCCTCC
CACGACCAGGAGGTGGAACATGTCCGGCTGCAGTACCAGCGAGACACGGAGCAGCTTCGCCGGAGCATGC
AAGATGCGACCCAGGACCATGCTGCACTGGAGGCTGAGAGGCAGAAGATGTCTTCCCTCGTGCGGGAGCT
GCAAAGAGAGCTAGAGGAGACCTCTGAGGAGACAGGGCATTGGCAGAGCATGTTCCAGAAGAACAAGGAA
GAGCTGAGAGCCACCAAGCAGGAACTGCTGCAACTGCGGATGGAGAAGGAGGAGATGGAAGAGGAACTTG
GGGAGAAGATGGAGGTCTTACAGAGGGACTTAGAGCAGGCCCGAGCCAGTACAAGAGATACTCACCAGGT
TGAGGAACTTAAAAAGGAGCTTCGACGCACCCAGGGGGAGCTTAAAGAGCTTCAGGCAGAGCAGCAGAAC
CAGGAGGTGACTGGGCGACACCAGAACCAGGTGTTAGAGAAGCAGCTGGCAGCGCTGAGGGAGGAGGCTG
ATCGAGGCCGAGAGCTGGAGCAGCAGAACCTCCAGCTACAAAAGACCCTGCAGCAACTGCGGCAGGACTG
TGAAGAGGCTTCCAAGGCTAAGGTGGCATCAGAGACAGAGGCCATGGTGCTGGGGCAGCGTCGGGCAACC
GTGGAAACCACACTTCGGGAGACACAAGAGGAAAATGACGAATTCCGAAGGCGCATCCTGGGTCTGGAGC
AGCAGTTGAAGGAGGCCCGAGGTCTGGCGGAAGGTGGGGAAGCGGTGGAGGCACGGCTTCGGGACAAAGT
GCATCGGCTGGAGGTAGAGAAACAGCAGCTGGAAGAGGCTTTGAATGCTGCCCGGGAGGAGGAGGGGAAC
CTGGCAGCAGCCAAGCGGGCTCTGGAGGTCCGGCTAGATGAGGCCCAGCGGGGGCTGGCACGCCTTGGGC
AGGAACAGCAAGCACTGAACCGGGCCCTAGAGGAAGAGGGGAAGCAGCGGGAGGCTCTCCGGAGGAGCAA
GGCAGAGTTGGAGGAGCAGAAGCGTTTGCTGAACAGGACTGTAGACCGACTCAACAAAGAGCTGGAGCAG
ATTGGGGATGACTCCAAGCTAGCCCTGCAGCAGCTCCAGGCTCAGATGGAAGATTACAAGGAAAAGGCCC
GGAAGGAAGTAGCTGATGCCCAGCGTCAGGCCAAGGATTGGGCCAGTGAGGCTGAAAAGAATTCAGGGGG
GCTGAGCCGGCTTCAGGATGAGCTGCAAAGGCTGCGGCAAGCCCTGCAGACATCCCAGGCTGAGCGGGAC
ACAGCCAGGCTGGACAAAGAGCTGCTGGCCCAGCGACTGCAGGGTCTAGAGCAAGAGGCTGAGAACAAGA
AACGCTTCCAGGACGACAAGGCTCGACAGCTGAAGAGCCTAGAGGAGAAAGTCTCGCGGCTGGAAGCGGA
GTTAGATGAAGAAAAGAACACTGTGGAACTGTTAACAGATCGGGTGAACCGTGGCCGGGATCAGGTGGAT
CAACTGAGGACAGAGCTCATGCAGGAGAGATCTGCTCGACAGGACTTGGAGTGTGACAAAATCTCCTTGG
AGAGACAGAACAAGGATTTGAAGACCCGGTTGGCCAGTTCAGAGGGCTTCCAGAAACCCAGCGCTAGCCT
CTCCCAGCTTGAGTCCCAGAATCAGCTGCTGCAAGAGCGGCTGCAAGCTGAAGAGAGAGAGAAGACAGTT
CTGCAGTCCACCAATCGCAAACTAGAACGGAGGGTTAAGGAGCTCTCCATCCAGATTGATGATGAACGGC
AGCATGTCAACGACCAGAAGGACCAGCTAACCCTGAGGGTGAAGGCTTTGAAGCGGCAGGTGGATGAAGC
AGAAGAGGAAATTGAGCGGCTGGACAGCCTGAGGAAGAAGGCACAGCGGGAACTGGAGGAACAGCATGAG
GTCAATGAACAGCTCCAAGCCCGGATCAAATCCTTGGAAAAGGATGCCTGGCGGAAAGCTTCCCGCTCAG
CTGCTGAGTCAGCCCTCAAACAAGAGGGGCTGAGCTCTGATGAGGAGTTTGACAACGTCTACGACCCCTC
ATCCATTGCATCACTGCTTACTGAGAGCAACCTGCAGACTAGCTCATGTTAG

Translation (1183 aa):
MADPRGPVDHGVQIRFITEPEGATEMGTLRRSGRRPARDARASTYGVAVRVQGIAGQPFVVLNSGEKGTD
SFGVQIKGGNNRGSPGALSSDSELPENPYSQVKGRPATSRSSTSDEEPKDHLNGKLIRSQSQASLTGLAF
MSPSNRSTSLLELAPKPTSSINTIDTAPLSSVDSLINKFDSQKGGQVRGRTGRRTRTLPHEQRKRSQSLD
SRLPRDTREEREHQSANHWTRGTKYDNHVDSSKNPSQKQSPFSSFSRSRQTQDWVLQSFEETRDPAMVQF
KSTPDLLRDQRETAPPGSADHVKATIYGILREGSSESEASVRRKVSLVLEQMQPLGALAGQAELTRKMEE
LQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHG
LEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVAS
HDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKE
ELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQN
QEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRAT
VETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGN
LAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQ
IGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERD
TARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVD
QLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTV
LQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHE
VNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEEFDNVYDPSSIASLLTESNLQTSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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