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Report for CCDS80008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80008.1 Public Mus musculus 3 Sass6 23 108 98 CCDS HistoryNCBI Gene:72776Re-query CCDS DB by CCDS ID:80008.1Re-query CCDS DB by GeneID:72776See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197335.1 ENSMUSP00000143123.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197335.1Link to Ensembl Protein Viewer:ENSMUSP00000143123.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197335Re-query CCDS DB by Protein ID:ENSMUSP00000143123
Original member Current member NCBI NM_001289571.1 NP_001276500.1 Accepted alive Link to Nucleotide Sequence:NM_001289571.1Link to Protein Sequence:NP_001276500.1Re-query CCDS DB by Nucleotide ID:NM_001289571Re-query CCDS DB by Protein ID:NP_001276500Link to BLAST:NP_001276500.1

Chromosomal Locations for CCDS 80008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116595158 116595178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116605197 116605276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116605665 116605769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116607323 116607494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116608384 116608449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116610264 116610383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116613906 116614097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618256 116618450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618560 116618649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618724 116618903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116619251 116619332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116620058 116620191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116621383 116621508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116627073 116627167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116628518 116628612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116628708 116628814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGCAAAGACTGCGAGGAGAGGATTTAGTCATCCGTCTGACTGATGATACAGATCCGTTTTTTCTGTATA
ACCTTGTTATATCTGAGGAAGATTTTCAAAGTTTAAAATTGCAGCAAGGTCTCCTGGTGGACTTCTTAGC
TTTCCCACAGAAGTTTATAGACCTCCTTCAGCAGTGTATGCAAGAACACGCGAAAGAGACTCCAAGGTTC
CTGCTGCAGCTTCTTTCTTCAGCCACTCTTTTGGAGAACTCACCGGTCCTTTTAAACGTAGTGGAGACAA
ATCCTTTTAAGCATCTTATTCACCTGTCACTAAAGCTTTTACCTGGAAATGATGTAGAAATAAAGAAATT
TCTAGCAGGATGTTTGAAATGTAGCAAGGAAGAAAAATTATCACTGACTAGATCACTAGATGATGTTACC
AGGCAACTGCACATTACACAAGAGACGTTGTCGGAAAAAATGCAAGAATTAGATAAGCTGCGGAGTGAAT
GGGCCTCGCACACAGCATCGCTGACGAATAAGCACTCTCAGGAGTTAACAGCTGAGAAGGAGAAGGCCTT
GCAGACCCAAGTTCAGTGCCAACAGCAGCACGAGCAACAGAAAAAGGAACTGGAAACCCTCCATCAACGG
AATATCCACCAGCTACAAAGCAGATTGTCCGAGTTAGAGGCAGCTAATAAAGAGCTCACCGAGAGGAAGT
ATAAAGGAGACTCGACTGTCCGAGAGCTAAAGGCGAAGCTGGCTGGCGTGGAAGAGGAGCTGCAGCGGGC
CAAGCAAGAGGTCCTTTCTCTGAGAAGAGAGAATTGTACTCTGGATACTGAATGCCACGAGAAAGAAAAG
CACATCAACCAGCTACAAACAAAAGTGGCCGTTTTAGAACAGGAGATCAAAGATAAAGACCAGCTTGTTC
TGAGAACAAAAGAAGCATTCGATACAATCCAAGAGCAAAAGGTGGCTTTAGAAGAAAATGGTGAGAAAAA
TCAGATACAACTGGGAAAACTTGAAGCTACAATAAAATCATTATCAGCAGAACTTCTAAAGGCAAATGAG
ATCATCAAGAAGTTACAAGGAGATCTTAAAACTCTGATGGGTAAATTGAAACTGAAGAATACAGTTACTA
TTCAGCAAGAAAAACTATTGGCTGAGAAAGAAGAAATGCTACAAAAGGAGCGAAAGGAATCACAGGACGC
TGGGCAGTTTCTTCGTGCCAAAGAGCAAGAGGTATGCAGATTACAGGAACAATTAGAAACTACAGTTCAG
AAACTCGAAGAAAGTAAACAACTTTTGAAAAATAATGAAAAATTAATCACGTGGCTAAACAAAGAGCTAA
ATGAAAATCAGCTGGTAAGAAAACAGGACACATTGGGAACCTCTGCCACCCCACATTCTACTAGCAACAG
CACCATCAGAAGTGGGCTCTCTCCCAATCTGAATGTGGTTGATAGACTAAATTACCCAAGCTGTGGAATT
GGCTATCCTGTCTCCTCTGCATTGACATTCCAGAATGCTTTTCCTCATGTAGTAGCTGCCAAAAACACCA
GCCACCCTATCTCTGGACCAAAGGTTCACTTTAACCTGCAGCTTACAAAACCAAGCGCTTCGATAGATGG
GCAGCCGGGAGCCGCTGTTAACAGGCCTTGTTCAAATGATAAGGAAAATGGTGAAACTTTAGGATTGGAA
TCCAAATACTTGAAGAGAAGAGAAGCTAGCATTCCTTTACGCGGACTTAGCCAGAATCTGTTGAGTGACT
CAGACCATCAGAAAGACGGCATGCTGGGAGCGTTCCAGCTATCTTCCAAACCCACCGTTCTCCCCTCCTC
GTCTTCAGCCTACTTCCCTGGGCAGTTACCAAGTAGTTAA

Translation (619 aa):
MQRLRGEDLVIRLTDDTDPFFLYNLVISEEDFQSLKLQQGLLVDFLAFPQKFIDLLQQCMQEHAKETPRF
LLQLLSSATLLENSPVLLNVVETNPFKHLIHLSLKLLPGNDVEIKKFLAGCLKCSKEEKLSLTRSLDDVT
RQLHITQETLSEKMQELDKLRSEWASHTASLTNKHSQELTAEKEKALQTQVQCQQQHEQQKKELETLHQR
NIHQLQSRLSELEAANKELTERKYKGDSTVRELKAKLAGVEEELQRAKQEVLSLRRENCTLDTECHEKEK
HINQLQTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVALEENGEKNQIQLGKLEATIKSLSAELLKANE
IIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEMLQKERKESQDAGQFLRAKEQEVCRLQEQLETTVQ
KLEESKQLLKNNEKLITWLNKELNENQLVRKQDTLGTSATPHSTSNSTIRSGLSPNLNVVDRLNYPSCGI
GYPVSSALTFQNAFPHVVAAKNTSHPISGPKVHFNLQLTKPSASIDGQPGAAVNRPCSNDKENGETLGLE
SKYLKRREASIPLRGLSQNLLSDSDHQKDGMLGAFQLSSKPTVLPSSSSAYFPGQLPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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