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Report for CCDS80296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80296.1 Public Mus musculus 5 Guf1 23 108 98 CCDS HistoryNCBI Gene:231279Re-query CCDS DB by CCDS ID:80296.1Re-query CCDS DB by GeneID:231279See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031113.12 ENSMUSP00000031113.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031113.12Link to Ensembl Protein Viewer:ENSMUSP00000031113.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031113Re-query CCDS DB by Protein ID:ENSMUSP00000031113
Original member Current member NCBI NM_001310631.1 NP_001297560.1 Accepted alive Link to Nucleotide Sequence:NM_001310631.1Link to Protein Sequence:NP_001297560.1Re-query CCDS DB by Nucleotide ID:NM_001310631Re-query CCDS DB by Protein ID:NP_001297560Link to BLAST:NP_001297560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297560.1 563 Q8C3X4-2 563 100% 0 0

Chromosomal Locations for CCDS 80296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69557055 69557165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69558185 69558296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69558442 69558590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69558847 69558927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69559550 69559627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69560432 69560515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69561135 69561199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69561654 69561857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69565430 69565562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69566361 69566504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69567128 69567261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69568396 69568497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69569229 69569348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69570761 69570797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69571584 69571721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGTGGGCGCTCGTGGGGCGGGCTCTCGCGCCGTGGGCCGCCGGGGCCCGGCACGCGGCTGCCTCGGAGC
CCAGGGCCGCCTGCAGGCTCTTCAGCGCGGCCGAGCTCAAGGAGAAACCTGACATGTCTAGATTTCCTGT
TGAAGACATTAGAAATTTCAGTATCATTGCACATGTGGATCATGGCAAAAGCACTTTAGCTGACAGGCTC
CTGGAGCTAACAGGAACAATTGATAAGACGAAGAAAAACAAGCAGGTTCTTGATAAATTACAAGTAGAAC
GAGAAAGAGGAATCACTGTGAAGGCGCAGACAGCCTCTCTGTTTTACAGCTTTGGAGGGAAACAGTACCT
TTTAAACCTCATCGACACACCAGGCCACGTTGATTTTAGTTATGAAGTGTCCAGGTCACTGTCTGCATGC
CAAGGTGTTTTACTGGTAGTGGATGCAAATGAGGGTATTCAAGCTCAAACTGTGGCCAACTTCTTCCTTG
CTTTTGAAGCACAGCTGTCAGTAATTCCAGTTATCAATAAGATAGATCTGAAGAATGCTGACCCTGAAAG
GGTGGGAAAGCAGATTGAAAAAGTATTTGATATCCCTAGTGAGGAGTGTATTAAGATTTCTGCGAAACTT
GGGACAAACGTTGACAGTGTGCTTCAGGCAGTCATTGAACGAATACCTCCTCCAAAAGTCCATCGTGAAA
ACCCACTGAAAGCTTTGGTATTTGACTCCACCTTTGACCAGTACAGAGGGGTGATAGCCAATATAGCACT
GTTTGATGGAGTGGTTTCCAAGGGAGATAAAATTGTATCTGCACATACTAAAAAAGCATATGAAGTCAAT
GAAGTAGGCATTTTGAATCCTAATGAACAGCCAACTCATAAATTGTTGGGGTTTCTTGGACTTTTACATA
TGGAGGTTTTCAACCAGCGATTAGAGCAAGAATATAACGCTTCTGTCATTTTGACAACCCCAACTGTTCC
ATACAAAGCTGTTCTTTCCTCTGCAAAATTAATAAAGGAATATAAAGAGAAGGAGATCACAATCATCAAC
CCTGCACAGTTCCCTGAGAAGTCCCAAGTAACAGAATATTTGGAACCTGTTGTTTTGGGCACTGTTATTA
CACCGACTGAGTACACTGGAAAAATAATGGCGCTTTGTCAGGCACGAAGAGCAATTCAGAAAAATATGAC
TTTTATTGATGAAAATAGAGTTATGCTTAAATATCTCTTCCCTTTGAATGAAATTGTGGTAGATTTTTAT
GACTCTTTGAAGTCTCTCTCTTCTGGATATGCAAGTTTTGATTATGAAGATGCCGGTTACCAGACTGCAG
AACTCGTTAAAATGGATATTCTGCTGAATGGAAATATGGTGGAAGAGCTTGTAACTGTGGTCCATAGAGA
GAAAGCCTACACTGTTGGCAAAAGCATATGTGAACGCCTGAAGGAGTCTCTTCCCAGACAACTGTATGAG
ATAGCAATTCAAGCTGCTGTTGGGAGCAAAGTTATTGCAAGAGAAACAGTGAAAGCCTACAGAAAAAATG
TTTTGGCAAAATGTTATGGTGGTGATATTACCCGGAAAATGAAACTTCTGAAGAGACAGTCCGAAGGGAA
AAAGAAGCTGAGGAAGATTGGCAACATTGAGATTCCAAAAGACGCTTTCATAAAAGTCCTGAAAACCCAG
CCTAATAAATGA

Translation (563 aa):
MWALVGRALAPWAAGARHAAASEPRAACRLFSAAELKEKPDMSRFPVEDIRNFSIIAHVDHGKSTLADRL
LELTGTIDKTKKNKQVLDKLQVERERGITVKAQTASLFYSFGGKQYLLNLIDTPGHVDFSYEVSRSLSAC
QGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVGKQIEKVFDIPSEECIKISAKL
GTNVDSVLQAVIERIPPPKVHRENPLKALVFDSTFDQYRGVIANIALFDGVVSKGDKIVSAHTKKAYEVN
EVGILNPNEQPTHKLLGFLGLLHMEVFNQRLEQEYNASVILTTPTVPYKAVLSSAKLIKEYKEKEITIIN
PAQFPEKSQVTEYLEPVVLGTVITPTEYTGKIMALCQARRAIQKNMTFIDENRVMLKYLFPLNEIVVDFY
DSLKSLSSGYASFDYEDAGYQTAELVKMDILLNGNMVEELVTVVHREKAYTVGKSICERLKESLPRQLYE
IAIQAAVGSKVIARETVKAYRKNVLAKCYGGDITRKMKLLKRQSEGKKKLRKIGNIEIPKDAFIKVLKTQ
PNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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