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Report for CCDS80360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80360.1 Public Mus musculus 5 Ankle2 23 108 98 CCDS HistoryNCBI Gene:71782Re-query CCDS DB by CCDS ID:80360.1Re-query CCDS DB by GeneID:71782See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031474.10 ENSMUSP00000031474.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031474.10Link to Ensembl Protein Viewer:ENSMUSP00000031474.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031474Re-query CCDS DB by Protein ID:ENSMUSP00000031474
Original member Current member NCBI NM_027922.2 NP_082198.1 Accepted alive Link to Nucleotide Sequence:NM_027922.2Link to Protein Sequence:NP_082198.1Re-query CCDS DB by Nucleotide ID:NM_027922Re-query CCDS DB by Protein ID:NP_082198Link to BLAST:NP_082198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082198.1 963 Q6P1H6-2 963 100% 0 0

Chromosomal Locations for CCDS 80360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110231237 110231423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110234347 110234820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110236273 110236479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110237658 110237851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110237947 110238135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110241929 110242051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110244504 110244570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110249331 110249500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110250701 110250807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110251497 110251687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110252712 110253342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110253783 110253914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110254301 110254520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGCTGTGGCAGCGGCTGGCTGTGGTGGAGTGGGCGGCCCTGGCCTGGGAGCTCCTGGGCGCCTCGGTGC
TGTTCATCGCCGTGCGCTGGCTGGTCCGCCGGCTAGAGAAGCGGCCGCGGGACCTGAACCGTTGCGGGAC
GCTCTCCTCTCCGCCCAGCGCGTCTGAAGCGGTGGCCGCACAGCCAGGTGAAGTGACAATGGATGCCATG
ATGGCTCGACTGAAACTCTTGAATCCAGATGACCTTAGAAAAGAAGTTATGAAAGCTGGACTTAAATGTG
GACCCATTACATCAACAACAAGATTTATTTTTGAGAAGAAATTAGCTCAGGCCTTACTGGAACAAGGTGG
ATTGCTGACCTCTTCCCTTCCCAAGCCCAGCGCGGTTACTGCCATGGCATTTATCCAGGGCACCTCAAGG
ACTCCTCCATCTGTGGACGGGAAACAAACTCAGCAGGCCTGTTTTTCTGAAGACAGAGATTTTGGTTACA
GTGTGGGCTTGAACCCTCCAGAAGAGGAAGCGGTAGCATCCAGTGTCCACCCAGTACCCTTCAGTGCCTC
TACCAGGAATGACAACCACAAGGCTGGAGTGACAGCTCCTAAGGAGCCACTTGTGTACTATGGAGTGTGT
CCAGTATATGAGGATGGCCCTGTGAGACATGAGAGGATCCATGTTTACGAAGATAAAAAGGAAGCTTTAC
AAGCTGCCAAGTTGATCAAAGGGTCCCGGTTTAAAGCTTTTCGAACAAGAGAAGATGCTGAGAAATTTGC
TAGAGGGATATGTGATTATTTACCTTCTCCCAACAAAACTACGCCCTTACTGTCTCCTGTGAAGGCAGTG
CCCCTCGGTGGCAGTGATGGGCTGAAAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAAC
GAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAAAGCTGTCGAAAACGG
GGAGGAACACACCTTTTCTGATCTTATCTGGAGTAATCCTCGATATCTAATTGGTTCTGGGGACAACCCA
ACCATTGTACAAGAAGGATGTAGGTACAATGTCATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGT
GCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGA
CATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGAT
ACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGA
TTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAA
ATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGGGTCACTACTATGTGCCACTCCTGAGAGCA
GAAGACACTTCTCCTGTCATTGGGGAGCTGTGGTCCTCAGACCAGAAAGCTGAAGCCTCAAATACTGCCC
ACTGTAGAAGCAGCCCCAGAGATCCTGTGATGACACTGAGAGCTTTCGTGGGACCTCTGAGTCCATCCAA
AGCAGAAGATTTTCGAAAGCTCTGGAAAACTCCACCTCGAAAGAAAGCAGGCTTCTTCCACAGCATCAGA
AAGTCTGACCCAGAACGAGGCATTGAGAGAGTTGGAAGGGAGCTAGCTCATGAGCTGGGGTATCCCTGGG
TTGAATACTGGGAATTTCTGGGATGTTTTGTTGATCTGTCTTCCCAGGAAGGCTTGCAAAGACTAGAAGA
ATACCTTATCCAGAAGGAGTTAAGCAAAAAGGCTCAACAAGAAATACGAGAAAATGAAGGCTGCCTTCAG
GACAGAACCTCAGATTTTGGCAGTGGAAAGAAGTACAGCAACTCCATCTCCGTGGGAGCATTTCTAGATG
GGGATGATGACAGTAGTTTGGAAGAAATTAAAAACCAGCAAAATACAGTTCCAAGTCAGAGTCAGCCCAC
AACTGATAAGTTCCAAACCTCTAAAAGTGGTTCCCTTCCCTTGGGACAGAAGGTCGACCCTGGAGAAACC
TCAGTTGGAACTTACCCAGATAAAGGCAGAAATGGGTTTTGTCACCCTCTAAACCACAGGACTGCAGATG
GAAGGGGACTAGAGGCCACCAATGGGGAGGAGGCCCTTCCACCACCTGTTTCTGTTTTGACTCAAGAGTT
GAATAAACTGAATTTGCAAAGCCTGGGAGACAGCCTTCATGAGACACCAGATAAAAACGGGAAACTAGAG
GATGAGGTGCTTCCTTCAAGAAAGGGTGCAGCAGACAGTGACTTGCTGGCATCTCCTCCTGCCATAGCAA
GCCTTGGAAAGAAGCAAGTCAGGACCAACACTGAGGTGTCAGAGGCAATGGCTGAAATGTCTTTGGGCCC
TAAGAGCCCCCAACTTGGAGTTCAGGCTGGTCTGGAACCTATACTCTCATCTGCCACGGTAGATTCCACC
AAGAGGCTCTTCCTGTCTGGAGAGGAACCATCAAAACTAGATCGAGATGTTTTAGCAGCTCTTGAGTGTG
CGAATATTGACCCTGGTCTGTACCCAGCAATCCACAGATGGAAAAGCACTGTCATGTGCTACTCGCCCTC
AGACAGACAGAGTTGGCCAAGTCCTGCACTCAAAGGGAAGTTCACAACTGAGTTGGTGGATCTCGATTGC
TCTCATAGCTGCTCAGGACGATGCAGTCCAGCTGGTAGCAGCCCCAGTAAGCCTGGCCACACCTCCTCCT
CTTCTGGCCTGCACAGCCCTGGACGCTACAGTCCAGCACATGGGAGACACTTCCAAAGAGTGGCACACGT
GGCCCGACTTGCAGCTCTGTAG

Translation (963 aa):
MLWQRLAVVEWAALAWELLGASVLFIAVRWLVRRLEKRPRDLNRCGTLSSPPSASEAVAAQPGEVTMDAM
MARLKLLNPDDLRKEVMKAGLKCGPITSTTRFIFEKKLAQALLEQGGLLTSSLPKPSAVTAMAFIQGTSR
TPPSVDGKQTQQACFSEDRDFGYSVGLNPPEEEAVASSVHPVPFSASTRNDNHKAGVTAPKEPLVYYGVC
PVYEDGPVRHERIHVYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAV
PLGGSDGLKDGLCLAESETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSNPRYLIGSGDNP
TIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKRILYVVDLYLNTPDKVGFD
TPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEVICERSQNKSPALKERIREYLMGHYYVPLLRA
EDTSPVIGELWSSDQKAEASNTAHCRSSPRDPVMTLRAFVGPLSPSKAEDFRKLWKTPPRKKAGFFHSIR
KSDPERGIERVGRELAHELGYPWVEYWEFLGCFVDLSSQEGLQRLEEYLIQKELSKKAQQEIRENEGCLQ
DRTSDFGSGKKYSNSISVGAFLDGDDDSSLEEIKNQQNTVPSQSQPTTDKFQTSKSGSLPLGQKVDPGET
SVGTYPDKGRNGFCHPLNHRTADGRGLEATNGEEALPPPVSVLTQELNKLNLQSLGDSLHETPDKNGKLE
DEVLPSRKGAADSDLLASPPAIASLGKKQVRTNTEVSEAMAEMSLGPKSPQLGVQAGLEPILSSATVDST
KRLFLSGEEPSKLDRDVLAALECANIDPGLYPAIHRWKSTVMCYSPSDRQSWPSPALKGKFTTELVDLDC
SHSCSGRCSPAGSSPSKPGHTSSSSGLHSPGRYSPAHGRHFQRVAHVARLAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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