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Report for CCDS80402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80402.1 Public Mus musculus 5 Lrrc43 23 108 98 CCDS HistoryNCBI Gene:381741Re-query CCDS DB by CCDS ID:80402.1Re-query CCDS DB by GeneID:381741See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196809.4 ENSMUSP00000143602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196809.4Link to Ensembl Protein Viewer:ENSMUSP00000143602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196809Re-query CCDS DB by Protein ID:ENSMUSP00000143602
Original member Current member NCBI NM_001289822.1 NP_001276751.1 Accepted alive Link to Nucleotide Sequence:NM_001289822.1Link to Protein Sequence:NP_001276751.1Re-query CCDS DB by Nucleotide ID:NM_001289822Re-query CCDS DB by Protein ID:NP_001276751Link to BLAST:NP_001276751.1

Chromosomal Locations for CCDS 80402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123489330 123489473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123492220 123492480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123494201 123494311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123496879 123497018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123499428 123499666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123500226 123500437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123501017 123501330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123503176 123503317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123503547 123503639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123503745 123503930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123504264 123504275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123508041 123508160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGAGACCAGCGAGTCCAGCACTAGCGACTACAGACAGACCGAGGGCGAGGGCGAGGGTGTACCGGGGA
CCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTGTGTCTGCGCGAATTCCCGTGTGGCATCGGGAG
CTGGAATAAGTCACGCTTTCTTCCTCAAAAATGTCGAGTCTGGAGGGAATTGGTACCCAAGGAGGAGGAG
ACACTGGTTCCCGAGGAGGAGACTGTGGAGGCCCTGCTGGGCCTGGTGCGCAGCAACCACTCTCCTTGGG
CTATGCTGAAGGATGCCAGCGCGGAGGACCGTTTCCTGAGGGAGCTGGCCATCCAGAATCCACTGATGAT
CAAAGACACTTTCTTCTACTCCTACTTCCGGTCCCTGCGGGTGGTGAACAAGGGGGTGAGTCTGGTGGAT
AAAGACCTCTTGAAATTTCTAAAGCTGGAGGAGTTGGTCCTGAGTGCCAATAAAATTGAGGAAATCGATG
CCAACAATCTGCCCCCGACATTGAAGGTGCTGGAGCTCTATGGCAATTTGATCGCCAGCATGGAGTGTCT
GTGCTCAGCCCCGCCCCCAAGGCTGCAGCACCTGGGGCTAGGCCACAACAAATTGCTGGGCCCTTTGGAG
AGTCTGTATGTCACCTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGG
ACCTGCAGAACATGATCTTGGGACTCAGTACCCTGAGGCACCTGAGGCTCCTAGTACTGCAGGGGAACCC
ACTATCTCTGGTGCCTTACTACCGTGGCTTTACCATAGACAGCCTGGCACATCTTTGTGTGCTGGACGAC
ATCACCGTGTCTCCCAATGAGAAGCACCAGTTCCGGGGACTCAACATTCACGGTGACCTTTTGGCACGTG
AGGCCCAGTTTGTGGTGACGATTGGAAATGTCAGAGGGGTTCTGGACAGCTCTATCTTGGACCCGGAGCC
GGGACCTGACGGCCCTTTCATTAGCTACAGCTATTATGTGACCTATGACTTTGTGGAAGATGAGGACATG
GAAAGAAATGTTAGTGGGCTAGTAGAGGCAACACATCATGACAGCGTTCTGGATGAGATCGACAAGCATT
TCTCTGGCACCGATGAGGAGGACCAACAGGAGGATCCCTTAGACGGCCGCCACCGCCACAGAGGCCGTCA
GAGGTTTCACCCAGGCTCGACGGAGGAGATGTCCAAGGAGCTGTCTGAGTTCATAGCGAAGGAGATGAGT
CAGATGGCAGAAGGCTCGGTTGAATCTGGGATAACAGAGGTCGACTGGTCGGAGACGAGCATTTCCATCC
ACTCTGCGCCCCTGCCACAGTCAATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACAT
CCAGCTCTGTCCATCCCCAGGGACAGTCCTCTTCAACACGGTGCACAAGCCCTGGTCAGATGTTATTCCC
TGCACCTATGAGATGAAGCACACCCTCAAGGAGCTGATCCGGGTCAAGGCCTTCCTGCTGGCTGGGACTA
CTGTGAGCATCGTAGAGGAGAAAATCCTCTCCTGGCCTGTGGTACCCACTCCCGTTGAGAGTCCCTTGCC
TGCCAAGAAGGGGAAAGACAACAATAAAAAGAAAGAGCCTGCTAAGGATAAGGTCCACAAGAAGAAAAAG
GAGCCGCCCAGGGAGCTGCGGCAGGACCCCCCTGTGCTGACGGTGTTGGGCAGCGGGCTGGTGTACCTGG
AGCCCTTGCTGGCCGGGGAGGCAGTGGTATCCACTGTGTGTAATTTCGGGGTGGTCCGAACCCTGGAGAC
AGACAGGCTCACACATGCCAGGGATTCAAAGAAGATAGGTCGAAAACGGTGCCTCCAACCATGGAAAGCG
GGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTGGAGGAAGC
ATTCCTTAGCTTGA

Translation (657 aa):
METSESSTSDYRQTEGEGEGVPGTLSTAVCEHLRKLCLREFPCGIGSWNKSRFLPQKCRVWRELVPKEEE
TLVPEEETVEALLGLVRSNHSPWAMLKDASAEDRFLRELAIQNPLMIKDTFFYSYFRSLRVVNKGVSLVD
KDLLKFLKLEELVLSANKIEEIDANNLPPTLKVLELYGNLIASMECLCSAPPPRLQHLGLGHNKLLGPLE
SLYVTSHNWPQLVSLDLGFNNLTDLQNMILGLSTLRHLRLLVLQGNPLSLVPYYRGFTIDSLAHLCVLDD
ITVSPNEKHQFRGLNIHGDLLAREAQFVVTIGNVRGVLDSSILDPEPGPDGPFISYSYYVTYDFVEDEDM
ERNVSGLVEATHHDSVLDEIDKHFSGTDEEDQQEDPLDGRHRHRGRQRFHPGSTEEMSKELSEFIAKEMS
QMAEGSVESGITEVDWSETSISIHSAPLPQSIDSSEELAKLRPKIDIQLCPSPGTVLFNTVHKPWSDVIP
CTYEMKHTLKELIRVKAFLLAGTTVSIVEEKILSWPVVPTPVESPLPAKKGKDNNKKKEPAKDKVHKKKK
EPPRELRQDPPVLTVLGSGLVYLEPLLAGEAVVSTVCNFGVVRTLETDRLTHARDSKKIGRKRCLQPWKA
GTSQSHCRWRSRSSCTSTARWRKHSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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