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Report for CCDS80455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80455.1 Public Mus musculus 5 Rnf216 23 108 98 CCDS HistoryNCBI Gene:108086Re-query CCDS DB by CCDS ID:80455.1Re-query CCDS DB by GeneID:108086See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053498.12 ENSMUSP00000052563.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053498.12Link to Ensembl Protein Viewer:ENSMUSP00000052563.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000053498Re-query CCDS DB by Protein ID:ENSMUSP00000052563
Original member Current member NCBI NM_080561.4 NP_542128.2 Accepted alive Link to Nucleotide Sequence:NM_080561.4Link to Protein Sequence:NP_542128.2Re-query CCDS DB by Nucleotide ID:NM_080561Re-query CCDS DB by Protein ID:NP_542128Link to BLAST:NP_542128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542128.2 853 P58283-1 853 100% 0 0

Chromosomal Locations for CCDS 80455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142992649 142992965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142993502 142993571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143015624 143015846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143027946 143028043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143068317 143068395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143068846 143068994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143075727 143075864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143077427 143077477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143080224 143080363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143080963 143081077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143085871 143086035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143087519 143087621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143089743 143089819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143090120 143090758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143092995 143093125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143098379 143098445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGGCAGAGGGAAACAACAAAGAGGAGGTCATTCACTTGAACAACTTTCCCTGCCACCGGGGAAAGGAAT
GGATGGCTGTCAGAGAGGGGCCCATCACCATATCTGACTCCTCTGATGAGGAAGGGATTCCAATGCTGGT
TACCCCAGCTACAGAGCAACAGGAAGACGACCTGGATGATGATGTCATCCTGACAGAAGATGATTCTGAG
GATGAATATGGTGGATTTCTGGATCTTGAGAGTGGCAAAAAAGAGGGAGAAGCCAAACCTGGACCAAGCA
GTAAGCAGACAGCAGACGATATTGTCAACCCCAGATTGGAGCAGAAAGTCATTATATTGGGAGAAAATGG
TCTTCTTTTCCCAGAAAGTGAGCCTTTGGAAGTTCAGAACCAATCATCCGAAGACTCAGAGACAGAGCTC
TTATCAAATCCTGGAGAGCCAGCTGCCTCAGTAGATGACCAGCTAATTGGAGAAGAGTACTGGCTTGACC
ATCCATACTTCCAGGCTCCGAATCCACAGCCTCAGGAAAGAACAAACCAGGTTGTGCCCCAAGAGCGACA
TTCTGAATCAGAAATGGGCCCAATGTTTTTCCGCCATGATTTCCCAGAGCCAGCTTTTCCAAGGCCAGAA
CCCCAGCAGGAGGGGATTCCAGGCCCTGCTTCTCCACAGCCAGCCCATCCTCTAGGAGAGCTTGAAGACC
AGCAGTTAGCAATTGATGAAGACCCTGGGCCAGCCTTCCCCCTGTCAGGACCTCAGGAGGCCAACTTGGC
AAACATGTGGGAACAAGAAGCTGCTGAGGTAGATCAAGACCTCATTCCACTGTTAGTGAAAGAAACGGAA
GCAAGATTTCCAGATGTAGCAAGTGGATATGTTGAAGAAATAATTCATTTGAAAAATTACTATGATTTGA
ATGTACTTTGTAATTTTCTTCTGGAAAACCCAGATTATCCAAAGAGAGAAGACCGGCTTATTATCCACCC
CAGCAGCAGCCTGCTTGCCAGCCAGGATGACGCGAAGTTGCCTAAAATAGACTTTTTTGACTATTCCAAA
TTGACTCCACTTGACCAGCGCTGCTTCATCCAAGCTGCTGACCTCCTGATGGCTGATTTCAAGATGCTTA
GCAGCCAGGACATCAAGTGGGCCCTTCATGAGCTCAAAGGACACTATGCAATCACCCGAAAGGCCTTTTC
CGATGCCATTAAGAAATGGCAGGAGTTGTCACCTGAAACCAGTGGAAAACGGAAAAAGAGGAAAGAAATG
AATCAGTATTCTTTCATAGATTTCAAGTTTGAACAAGGAAACATAAAAATAGAAAAGAGGATGTTCTTTC
TGGAAAACAAGCGTCGACACTGTAGGTACTATGACCATCAGGCCCTCCTTCCAGCTGTGAAACAGGAGCA
GGAATTCTATGAGCAGAAAATTAAAGAGATGGCAGAGCATGAAGACTTCTTGCTCGCCCTGCAGATGAAT
GAAGAACAGTATCAAAAGGATGGCCAGCTGATTGAATGCCGCTGTTGCTATGGGGAGTTTCCATTTGAGG
AGCTGACACAATGCGCCGATGCTCACTTGTTCTGCAAAGAATGTCTCATCAGATATGCCCAGGAGGCAGT
GTTTGGATCTGGAAAGTCAGAACTCAGCTGCATGGAAGGCAGCTGCACGTGCTCCTTCCCAACCAGTGAG
CTGGAGAAGGTGCTCCCCCAGACCATTCTGTACAAATACTATGAACGGAAAGCTGAGGAAGAAGTCGCTG
CAGCCTATGCTGATGAGCTTGTCCGGTGCCCCTCCTGCAGCTTCCCTGCTCTGTTGGACAGCGATGTGAA
GAGGTTCAGCTGCCCCAACCCACGCTGCCGAAAGGAGACCTGTAGGAAGTGTCAGGGACTCTGGAAAGAA
CACAACGGCCTCACCTGTGAAGAGCTGGCAGAAAAGGATGACATCAAGTACCGGACATCCATTGAAGAAA
AAATGACTGCTGCTCGGATTAGAAAATGTCACAAGTGTGGAACTGGCCTCATCAAGTCTGAAGGCTGCAA
CCGCATGTCTTGCCGCTGTGGTGCCCAGATGTGCTACCTCTGTCGAGTTTCTATCAATGGCTATGACCAT
TTCTGCCAGCATCCTCGCTCTCCAGGAGCCCCTTGCCAAGAATGTTCCAGGTGCTCCCTGTGGACCGACC
CCACTGAAGATGATGAAAAGCTGATTGAGGAAATCCAAAAGGAGGCCGAGGAGGAACAGAAGAGAAAGAA
TGGAGAGAACACCTTCAAACGCATCGGGCCCCCACTGGAGAAGCCAGCTGAGAAGGTGCAGCGTGTGGAA
GCCCTGCCGCGGCCTGTCCCACAGAACCTGCATCCTCAGATGCCGCCCTATGCCTTTGTTCACCCACCCT
TCCCCCTGCCACCTGTGCGGCCCGTGTTCAACAACTTCCCCATCAACATGGGTCCTGTGCCCGCTCCCTA
TGTCCCCCCTCTGCCCAACGTGCGTGTCAACTATGACTTTGGCCACATGCACGTGCCCCTGGAGCACAAC
CTGCCCATGCACTTTGGCCCCCAACCACGGCATCGCTTCTGA

Translation (853 aa):
MAEGNNKEEVIHLNNFPCHRGKEWMAVREGPITISDSSDEEGIPMLVTPATEQQEDDLDDDVILTEDDSE
DEYGGFLDLESGKKEGEAKPGPSSKQTADDIVNPRLEQKVIILGENGLLFPESEPLEVQNQSSEDSETEL
LSNPGEPAASVDDQLIGEEYWLDHPYFQAPNPQPQERTNQVVPQERHSESEMGPMFFRHDFPEPAFPRPE
PQQEGIPGPASPQPAHPLGELEDQQLAIDEDPGPAFPLSGPQEANLANMWEQEAAEVDQDLIPLLVKETE
ARFPDVASGYVEEIIHLKNYYDLNVLCNFLLENPDYPKREDRLIIHPSSSLLASQDDAKLPKIDFFDYSK
LTPLDQRCFIQAADLLMADFKMLSSQDIKWALHELKGHYAITRKAFSDAIKKWQELSPETSGKRKKRKEM
NQYSFIDFKFEQGNIKIEKRMFFLENKRRHCRYYDHQALLPAVKQEQEFYEQKIKEMAEHEDFLLALQMN
EEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIRYAQEAVFGSGKSELSCMEGSCTCSFPTSE
LEKVLPQTILYKYYERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPRCRKETCRKCQGLWKE
HNGLTCEELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDH
FCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPAEKVQRVE
ALPRPVPQNLHPQMPPYAFVHPPFPLPPVRPVFNNFPINMGPVPAPYVPPLPNVRVNYDFGHMHVPLEHN
LPMHFGPQPRHRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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