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Report for CCDS80526.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
80526.1 |
Public |
Mus musculus |
6 |
Hipk2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:15258](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:80526.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:15258](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 80526.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000160360.1 |
ENSMUSP00000125500.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000160360.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125500.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000160360](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125500](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001294144.1 |
NP_001281073.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001294144.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001281073.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001294144](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001281073](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001294144.2 |
NP_001281073.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001294144.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001281073.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001294144](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001281073](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001281073.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 80526.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3507 nt): ATGGCCCCCGTGTACGAAGGTATGGCCTCACATGTGCAAGTTTTCTCCCCTCACACCCTTCAATCAAGTG CCTTCTGTAGTGTGAAGAAACTAAAAGTAGAGCCAAGTTCCAACTGGGACATGACTGGGTACGGCTCCCA CAGCAAAGTGTACAGCCAGAGCAAGAACATACCACCTTCTCAGCCAGCCTCCACAACCGTCAGCACCTCC TTGCCAATCCCCAACCCAAGCCTACCTTACGAGCAGACCATCATCTTCCCAGGAAGTACTGGACACATAG TTGTAACATCAGCAAGTAGCACTTCTGTCACCGGGCAAGTCCTCGGTGGACCACATAACCTAATGCGTCG AAGCACTGTGAGCCTCCTTGACACCTACCAAAAATGTGGACTCAAGCGCAAGAGTGAGGAGATTGAGAAC ACAAGCAGCGTGCAGATCATTGAAGAGCATCCACCCATGATTCAGAATAATGCCAGCGGGGCCACTGTAG CCACTGCCACCACATCCACTGCCACCTCCAAAAACAGTGGCTCCAACAGTGAAGGGGACTATCAGCTGGT GCAGCATGAAGTACTGTGCTCCATGACCAACACCTATGAGGTTTTAGAGTTCTTGGGGCGAGGGACATTT GGGCAAGTGGTCAAGTGCTGGAAACGGGGCACCAATGAAATTGTGGCCATTAAGATCCTCAAGAACCACC CCTCCTATGCCCGGCAAGGCCAGATTGAAGTGAGCATCTTGGCCCGGCTGAGCACGGAGAGCGCTGATGA CTACAATTTTGTGCGGGCCTATGAGTGCTTCCAGCACAAGAACCACACGTGCTTAGTCTTTGAGATGTTG GAGCAGAACCTTTATGACTTTCTGAAACAGAACAAGTTTAGTCCCTTGCCCCTCAAGTATATTCGCCCAG TCCTCCAGCAGGTAGCCACAGCCCTGATGAAACTCAAAAGCCTGGGTCTTATCCATGCTGACCTCAAACC AGAAAACATCATGCTGGTGGATCCATCCAGACAACCGTACCGAGTGAAGGTCATTGACTTTGGTTCAGCT AGTCATGTGTCCAAAGCTGTCTGCTCTACGTACTTGCAATCCAGATACTACCGGGCCCCTGAGATCATCC TTGGTTTGCCATTCTGTGAGGCAATTGACATGTGGTCCCTTGGTTGTGTCATTGCTGAACTGTTCCTGGG CTGGCCATTATACCCAGGTGCTTCTGAGTATGATCAGATTCGGTATATTTCACAAACACAGGGTTTACCA GCTGAATATTTATTAAGTGCAGGGACAAAGACAACTAGGTTTTTCAACCGTGACACAGACTCACCGTATC CTTTGTGGAGGCTAAAGACACCAGATGACCATGAAGCAGAGACGGGAATTAAGTCAAAGGAAGCAAGAAA GTACATTTTCAACTGTTTGGATGATATGGCCCAGGTGAACATGACAACAGATTTGGAAGGGAGTGACATG TTAGTAGAGAAGGCAGACCGACGGGAGTTCATTGACCTGTTAAAGAAGATGCTGACCATCGATGCTGATA AGAGAGTCACTCCCATTGAAACTCTGAACCACCCCTTTGTCACCATGACACACCTGCTTGACTTCCCCCA TAGTGCCCATGTCAAATCTTGTTTCCAAAACATGGAGATTTGCAAGCGCCGGGTGAATATGTATGACACA GTGAACCAGAGCAAAACACCTTTCATCACTCACGTGGCCCCCAGCACATCCACCAACTTGACCATGACCT TTAACAACCAGCTGACCACTGTCCACAACCAGCCCTCAGCGGCATCCATGGCCGCGGTGGCCCCGCGGAG CATGCCCCTGCAGACGGGAACAGCCCAAATTTGTGCCCGACCTGATCCCTTCCAGCAAGCTCTCATCGTG TGTCCCCCTGGCTTCCAAGGCCTGCAGGCCTCTCCCTCCAAGCACGCTGGCTACTCAGTGCGGATGGAAA ATGCTGTCCCCATCGTCACCCAGGCGCCAGGAGCTCAGCCTCTTCAGATCCAACCAGGCCTGCTTGCTCA GGCCTGGCCAGGTGGGGCCCAACAGATCCTACTTCCTCCAGCATGGCAGCAGCTGACTGGCGTGGCCACC CACACATCTGTACAGCATGCAGCTGTGATTCCTGAGACCATGGCAGGCACTCAGCAACTGGCTGACTGGA GGAACACGCATGCTCATGGAAGTCATTACAATCCCATCATGCAGCAGCCTGCACTCTTGACTGGTCATGT GACCCTTCCAGCTGCCCAGCCCTTAAATGTGGGTGTAGCCCATGTGATGAGGCAACAACCAACCAGCACC ACCTCCTCCAGGAAGAGTAAGCAGCACCAGTCATCTGTGAGAAATGTCTCCACCTGTGAGGTGACCTCTT CACAGGCTATCAGCTCCCCTCAGCGATCCAAGCGTGTCAAGGAGAACACTCCCCCACGGTGCGCCATGGT ACACAGCAGCCCAGCTTGCAGCACCTCAGTCACCTGTGGGTGGGGCGACGTGGCCTCCAGCACCACCCGG GAGCGACAGCGGCAGACGATTGTCATCCCCGACACCCCGAGCCCCACAGTCAGTGTCATCACCATCAGCA GTGACACCGATGAAGAAGAGGAGCAGAAGCACGCCCCCACCAGCACAGTCTCCAAGCAAAGAAAAAATGT CATCAGCTGTGTCACCGTCCACGACTCTCCCTACTCTGACTCCTCCAGCAACACCAGCCCCTACTCGGTG CAGCAGCGCACAGGGCACAACGGCACCAACACCTTGGACACCAAGGGGGGCCTAGAGAATCACTGCACTG GCAACCCCCGCACCATCATCGTACCCCCACTGAAGACCCAGGCCAGTGAAGTGTTGGTAGAATGTGACAG CCTAGGGCCAGCGATCAGTGCCAGTCACCATTCGTCCTCCTTCAAGTCCAAGTCCTCCAGCACCGTGACC TCCACCAGTGGACACTCTTCAGGGAGCTCTTCAGGAGCCATCGCCTACCGTCAGCAGCGGCCAGGCCCCC ACTTCCAGCAGCAGCAGCCCCTCAATCTCAGCCAGGCCCAGCAGCACATGGCTGCGGACCGCACCGGGAG TCACCGTCGACAGCAGGCCTACATCACTCCGACCATGGCGCAAGCTCCGTACACCTTCCCGCACAACAGC CCCAGCCATGGCACTGTTCACCCCCACCTGGCTGCGGCTGCCCACCTCCCCACCCAGCCTCACCTCTACA CCTATACAGCGCCCACAGCCCTAGGCTCCACCGGCACTGTAGCCCACCTGGTGGCATCCCAAGGCTCAGC ACGCCACACCGTGCAGCACACTGCCTATCCGGCCAGCATCGTCCACCAGGTCCCTGTGAGCATGGGGCCC CGGGTCCTGCCCTCGCCCACCATCCACCCCAGTCAGTATCCAGCCCAGTTTGCCCACCAGACCTATATCA GCGCCTCGCCAGCCTCCACCGTCTACACTGGATACCCACTGAGTCCTGCCAAGGTCAACCAATACCCTTA CATATAA
Translation (1168 aa): MAPVYEGMASHVQVFSPHTLQSSAFCSVKKLKVEPSSNWDMTGYGSHSKVYSQSKNIPPSQPASTTVSTS LPIPNPSLPYEQTIIFPGSTGHIVVTSASSTSVTGQVLGGPHNLMRRSTVSLLDTYQKCGLKRKSEEIEN TSSVQIIEEHPPMIQNNASGATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTF GQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLVFEML EQNLYDFLKQNKFSPLPLKYIRPVLQQVATALMKLKSLGLIHADLKPENIMLVDPSRQPYRVKVIDFGSA SHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP AEYLLSAGTKTTRFFNRDTDSPYPLWRLKTPDDHEAETGIKSKEARKYIFNCLDDMAQVNMTTDLEGSDM LVEKADRREFIDLLKKMLTIDADKRVTPIETLNHPFVTMTHLLDFPHSAHVKSCFQNMEICKRRVNMYDT VNQSKTPFITHVAPSTSTNLTMTFNNQLTTVHNQPSAASMAAVAPRSMPLQTGTAQICARPDPFQQALIV CPPGFQGLQASPSKHAGYSVRMENAVPIVTQAPGAQPLQIQPGLLAQAWPGGAQQILLPPAWQQLTGVAT HTSVQHAAVIPETMAGTQQLADWRNTHAHGSHYNPIMQQPALLTGHVTLPAAQPLNVGVAHVMRQQPTST TSSRKSKQHQSSVRNVSTCEVTSSQAISSPQRSKRVKENTPPRCAMVHSSPACSTSVTCGWGDVASSTTR ERQRQTIVIPDTPSPTVSVITISSDTDEEEEQKHAPTSTVSKQRKNVISCVTVHDSPYSDSSSNTSPYSV QQRTGHNGTNTLDTKGGLENHCTGNPRTIIVPPLKTQASEVLVECDSLGPAISASHHSSSFKSKSSSTVT STSGHSSGSSSGAIAYRQQRPGPHFQQQQPLNLSQAQQHMAADRTGSHRRQQAYITPTMAQAPYTFPHNS PSHGTVHPHLAAAAHLPTQPHLYTYTAPTALGSTGTVAHLVASQGSARHTVQHTAYPASIVHQVPVSMGP RVLPSPTIHPSQYPAQFAHQTYISASPASTVYTGYPLSPAKVNQYPYI
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