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Report for CCDS80527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80527.1 Public Mus musculus 6 Hipk2 23 108 98 CCDS HistoryNCBI Gene:15258Re-query CCDS DB by CCDS ID:80527.1Re-query CCDS DB by GeneID:15258See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162359.7 ENSMUSP00000125150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162359.7Link to Ensembl Protein Viewer:ENSMUSP00000125150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162359Re-query CCDS DB by Protein ID:ENSMUSP00000125150
Original member NCBI NM_001294143.1 NP_001281072.1 Updated not alive Link to Nucleotide Sequence:NM_001294143.1Link to Protein Sequence:NP_001281072.1Re-query CCDS DB by Nucleotide ID:NM_001294143Re-query CCDS DB by Protein ID:NP_001281072
Current member NCBI NM_001294143.2 NP_001281072.1 Accepted alive Link to Nucleotide Sequence:NM_001294143.2Link to Protein Sequence:NP_001281072.1Re-query CCDS DB by Nucleotide ID:NM_001294143Re-query CCDS DB by Protein ID:NP_001281072Link to BLAST:NP_001281072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281072.1 1169 Q9QZR5-2 1169 100% 0 0

Chromosomal Locations for CCDS 80527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38698135 38698596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38699252 38699415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38703439 38703686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38715940 38716221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38718754 38718933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38721455 38721597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38729921 38730042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38730869 38730995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38737358 38737520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38743076 38743260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38745664 38745750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38747447 38747566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38747874 38747997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38818230 38819313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38875799 38875817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3510 nt):
ATGGCCCCCGTGTACGAAGGTATGGCCTCACATGTGCAAGTTTTCTCCCCTCACACCCTTCAATCAAGTG
CCTTCTGTAGTGTGAAGAAACTAAAAGTAGAGCCAAGTTCCAACTGGGACATGACTGGGTACGGCTCCCA
CAGCAAAGTGTACAGCCAGAGCAAGAACATACCACCTTCTCAGCCAGCCTCCACAACCGTCAGCACCTCC
TTGCCAATCCCCAACCCAAGCCTACCTTACGAGCAGACCATCATCTTCCCAGGAAGTACTGGACACATAG
TTGTAACATCAGCAAGTAGCACTTCTGTCACCGGGCAAGTCCTCGGTGGACCACATAACCTAATGCGTCG
AAGCACTGTGAGCCTCCTTGACACCTACCAAAAATGTGGACTCAAGCGCAAGAGTGAGGAGATTGAGAAC
ACAAGCAGCGTGCAGATCATTGAAGAGCATCCACCCATGATTCAGAATAATGCCAGCGGGGCCACTGTAG
CCACTGCCACCACATCCACTGCCACCTCCAAAAACAGTGGCTCCAACAGTGAAGGGGACTATCAGCTGGT
GCAGCATGAAGTACTGTGCTCCATGACCAACACCTATGAGGTTTTAGAGTTCTTGGGGCGAGGGACATTT
GGGCAAGTGGTCAAGTGCTGGAAACGGGGCACCAATGAAATTGTGGCCATTAAGATCCTCAAGAACCACC
CCTCCTATGCCCGGCAAGGCCAGATTGAAGTGAGCATCTTGGCCCGGCTGAGCACGGAGAGCGCTGATGA
CTACAATTTTGTGCGGGCCTATGAGTGCTTCCAGCACAAGAACCACACGTGCTTAGTCTTTGAGATGTTG
GAGCAGAACCTTTATGACTTTCTGAAACAGAACAAGTTTAGTCCCTTGCCCCTCAAGTATATTCGCCCAG
TCCTCCAGCAGGTAGCCACAGCCCTGATGAAACTCAAAAGCCTGGGTCTTATCCATGCTGACCTCAAACC
AGAAAACATCATGCTGGTGGATCCATCCAGACAACCGTACCGAGTGAAGGTCATTGACTTTGGTTCAGCT
AGTCATGTGTCCAAAGCTGTCTGCTCTACGTACTTGCAATCCAGATACTACCGGGCCCCTGAGATCATCC
TTGGTTTGCCATTCTGTGAGGCAATTGACATGTGGTCCCTTGGTTGTGTCATTGCTGAACTGTTCCTGGG
CTGGCCATTATACCCAGGTGCTTCTGAGTATGATCAGATTCGGTATATTTCACAAACACAGGGTTTACCA
GCTGAATATTTATTAAGTGCAGGGACAAAGACAACTAGGTTTTTCAACCGTGACACAGACTCACCGTATC
CTTTGTGGAGGCTAAAGACACCAGATGACCATGAAGCAGAGACGGGAATTAAGTCAAAGGAAGCAAGAAA
GTACATTTTCAACTGTTTGGATGATATGGCCCAGGTGAACATGACAACAGATTTGGAAGGGAGTGACATG
TTAGTAGAGAAGGCAGACCGACGGGAGTTCATTGACCTGTTAAAGAAGATGCTGACCATCGATGCTGATA
AGAGAGTCACTCCCATTGAAACTCTGAACCACCCCTTTGTCACCATGACACACCTGCTTGACTTCCCCCA
TAGTGCCCATGTCAAATCTTGTTTCCAAAACATGGAGATTTGCAAGCGCCGGGTGAATATGTATGACACA
GTGAACCAGAGCAAAACACCTTTCATCACTCACGTGGCCCCCAGCACATCCACCAACTTGACCATGACCT
TTAACAACCAGCTGACCACTGTCCACAACCAGCCCTCAGCGGCATCCATGGCCGCGGTGGCCCCGCGGAG
CATGCCCCTGCAGACGGGAACAGCCCAAATTTGTGCCCGACCTGATCCCTTCCAGCAAGCTCTCATCGTG
TGTCCCCCTGGCTTCCAAGGCCTGCAGGCCTCTCCCTCCAAGCACGCTGGCTACTCAGTGCGGATGGAAA
ATGCTGTCCCCATCGTCACCCAGGCGCCAGGAGCTCAGCCTCTTCAGATCCAACCAGGCCTGCTTGCTCA
GCAGGCCTGGCCAGGTGGGGCCCAACAGATCCTACTTCCTCCAGCATGGCAGCAGCTGACTGGCGTGGCC
ACCCACACATCTGTACAGCATGCAGCTGTGATTCCTGAGACCATGGCAGGCACTCAGCAACTGGCTGACT
GGAGGAACACGCATGCTCATGGAAGTCATTACAATCCCATCATGCAGCAGCCTGCACTCTTGACTGGTCA
TGTGACCCTTCCAGCTGCCCAGCCCTTAAATGTGGGTGTAGCCCATGTGATGAGGCAACAACCAACCAGC
ACCACCTCCTCCAGGAAGAGTAAGCAGCACCAGTCATCTGTGAGAAATGTCTCCACCTGTGAGGTGACCT
CTTCACAGGCTATCAGCTCCCCTCAGCGATCCAAGCGTGTCAAGGAGAACACTCCCCCACGGTGCGCCAT
GGTACACAGCAGCCCAGCTTGCAGCACCTCAGTCACCTGTGGGTGGGGCGACGTGGCCTCCAGCACCACC
CGGGAGCGACAGCGGCAGACGATTGTCATCCCCGACACCCCGAGCCCCACAGTCAGTGTCATCACCATCA
GCAGTGACACCGATGAAGAAGAGGAGCAGAAGCACGCCCCCACCAGCACAGTCTCCAAGCAAAGAAAAAA
TGTCATCAGCTGTGTCACCGTCCACGACTCTCCCTACTCTGACTCCTCCAGCAACACCAGCCCCTACTCG
GTGCAGCAGCGCACAGGGCACAACGGCACCAACACCTTGGACACCAAGGGGGGCCTAGAGAATCACTGCA
CTGGCAACCCCCGCACCATCATCGTACCCCCACTGAAGACCCAGGCCAGTGAAGTGTTGGTAGAATGTGA
CAGCCTAGGGCCAGCGATCAGTGCCAGTCACCATTCGTCCTCCTTCAAGTCCAAGTCCTCCAGCACCGTG
ACCTCCACCAGTGGACACTCTTCAGGGAGCTCTTCAGGAGCCATCGCCTACCGTCAGCAGCGGCCAGGCC
CCCACTTCCAGCAGCAGCAGCCCCTCAATCTCAGCCAGGCCCAGCAGCACATGGCTGCGGACCGCACCGG
GAGTCACCGTCGACAGCAGGCCTACATCACTCCGACCATGGCGCAAGCTCCGTACACCTTCCCGCACAAC
AGCCCCAGCCATGGCACTGTTCACCCCCACCTGGCTGCGGCTGCCCACCTCCCCACCCAGCCTCACCTCT
ACACCTATACAGCGCCCACAGCCCTAGGCTCCACCGGCACTGTAGCCCACCTGGTGGCATCCCAAGGCTC
AGCACGCCACACCGTGCAGCACACTGCCTATCCGGCCAGCATCGTCCACCAGGTCCCTGTGAGCATGGGG
CCCCGGGTCCTGCCCTCGCCCACCATCCACCCCAGTCAGTATCCAGCCCAGTTTGCCCACCAGACCTATA
TCAGCGCCTCGCCAGCCTCCACCGTCTACACTGGATACCCACTGAGTCCTGCCAAGGTCAACCAATACCC
TTACATATAA

Translation (1169 aa):
MAPVYEGMASHVQVFSPHTLQSSAFCSVKKLKVEPSSNWDMTGYGSHSKVYSQSKNIPPSQPASTTVSTS
LPIPNPSLPYEQTIIFPGSTGHIVVTSASSTSVTGQVLGGPHNLMRRSTVSLLDTYQKCGLKRKSEEIEN
TSSVQIIEEHPPMIQNNASGATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTF
GQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLVFEML
EQNLYDFLKQNKFSPLPLKYIRPVLQQVATALMKLKSLGLIHADLKPENIMLVDPSRQPYRVKVIDFGSA
SHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP
AEYLLSAGTKTTRFFNRDTDSPYPLWRLKTPDDHEAETGIKSKEARKYIFNCLDDMAQVNMTTDLEGSDM
LVEKADRREFIDLLKKMLTIDADKRVTPIETLNHPFVTMTHLLDFPHSAHVKSCFQNMEICKRRVNMYDT
VNQSKTPFITHVAPSTSTNLTMTFNNQLTTVHNQPSAASMAAVAPRSMPLQTGTAQICARPDPFQQALIV
CPPGFQGLQASPSKHAGYSVRMENAVPIVTQAPGAQPLQIQPGLLAQQAWPGGAQQILLPPAWQQLTGVA
THTSVQHAAVIPETMAGTQQLADWRNTHAHGSHYNPIMQQPALLTGHVTLPAAQPLNVGVAHVMRQQPTS
TTSSRKSKQHQSSVRNVSTCEVTSSQAISSPQRSKRVKENTPPRCAMVHSSPACSTSVTCGWGDVASSTT
RERQRQTIVIPDTPSPTVSVITISSDTDEEEEQKHAPTSTVSKQRKNVISCVTVHDSPYSDSSSNTSPYS
VQQRTGHNGTNTLDTKGGLENHCTGNPRTIIVPPLKTQASEVLVECDSLGPAISASHHSSSFKSKSSSTV
TSTSGHSSGSSSGAIAYRQQRPGPHFQQQQPLNLSQAQQHMAADRTGSHRRQQAYITPTMAQAPYTFPHN
SPSHGTVHPHLAAAAHLPTQPHLYTYTAPTALGSTGTVAHLVASQGSARHTVQHTAYPASIVHQVPVSMG
PRVLPSPTIHPSQYPAQFAHQTYISASPASTVYTGYPLSPAKVNQYPYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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