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Report for CCDS80907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80907.1 Public Mus musculus 8 Nfix 23 108 98 CCDS HistoryNCBI Gene:18032Re-query CCDS DB by CCDS ID:80907.1Re-query CCDS DB by GeneID:18032See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109762.7 ENSMUSP00000105384.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109762.7Link to Ensembl Protein Viewer:ENSMUSP00000105384.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109762Re-query CCDS DB by Protein ID:ENSMUSP00000105384
Original member Current member NCBI NM_001297601.2 NP_001284530.1 Accepted alive Link to Nucleotide Sequence:NM_001297601.2Link to Protein Sequence:NP_001284530.1Re-query CCDS DB by Nucleotide ID:NM_001297601Re-query CCDS DB by Protein ID:NP_001284530Link to BLAST:NP_001284530.1

Chromosomal Locations for CCDS 80907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84713786 84713857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84721643 84721818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84726469 84726602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727124 84727244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727605 84727679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727905 84727967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84771784 84772315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84773354 84773356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGATGAGTTCCACCCGTTTATCGAGGCGCTGCTGCCTCACGTCCGAGCCTTCTCCTACACCTGGTTCA
ACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGGATGTCAAAGGACGAGGAGCGCGC
AGTGAAGGACGAGCTGCTGGGCGAGAAGCCTGAGATCAAGCAGAAGTGGGCATCCCGGCTGTTGGCCAAG
CTGCGCAAAGACATCCGGCCCGAGTTCCGCGAGGACTTTGTGCTAACCATCACGGGCAAGAAGCCCCCCT
GCTGCGTGCTTTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAA
GGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAAGGGATCCCTTTGGAAAGTACTGATGGGGAG
CGGCTCTACAAGTCGCCCCAGTGCTCGAACCCCGGCCTGTGTGTCCAGCCACATCACATTGGAGTCACAA
TCAAAGAACTGGACCTTTATCTGGCTTACTTTGTCCACACTCCGGAATCCGGACAATCAGATAGTTCAAA
CCAGCAAGGAGATGCGGACATCAAACCACTGCCCAACGGGCACTTAAGTTTCCAGGACTGCTTTGTGACG
TCTGGGGTCTGGAATGTGACAGAGCTGGTGAGAGTATCACAGACTCCAGTTGCGACTGCATCAGGGCCCA
ACTTCTCACTGGCGGACCTGGAGAGCCCCAGCTACTACAACATAAATCAAGTGACCCTGGGAAGGCGGTC
CATCACCTCCCCTCCTTCCACCAGCACCAAGCGCCCCAAGTCCATCGACGACAGTGAGATGGAGAGTCCA
GTAGATGATGTGTTCTATCCTGGGACAGGCCGCTCTCCGGCCGCTGGCAGCAGCCAGTCTAGCGGATGGC
CCAATGACGTGGATGCAGGGAGCCCCCGGGCCACGGCATCAGCGCTGCACTTCCCTTCCACGTCCATCAT
CCAGCAGTCGAGCCCGTATTTCACACACCCAACCATCCGCTACCACCACCACCATGGGCAGGACTCGCTG
AAGGAGTTTGTGCAGTTTGTGTGCTCTGACGGCTCGGGTCAGGCCACCGGACAGCATTCACAACGACAGG
CGCCTCCTCTGCCAACCGGTTTGTCAGCATCGGATCCCGGGACGGCAACTTTCTGA

Translation (391 aa):
MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAK
LRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE
RLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVT
SGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTKRPKSIDDSEMESP
VDDVFYPGTGRSPAAGSSQSSGWPNDVDAGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSL
KEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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