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Report for CCDS81129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81129.1 Public Mus musculus X Mcf2 23 108 98 CCDS HistoryNCBI Gene:109904Re-query CCDS DB by CCDS ID:81129.1Re-query CCDS DB by GeneID:109904See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033478.4 ENSMUSP00000033478.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033478.4Link to Ensembl Protein Viewer:ENSMUSP00000033478.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033478Re-query CCDS DB by Protein ID:ENSMUSP00000033478
Original member Current member NCBI NM_001289730.2 NP_001276659.1 Accepted alive Link to Nucleotide Sequence:NM_001289730.2Link to Protein Sequence:NP_001276659.1Re-query CCDS DB by Nucleotide ID:NM_001289730Re-query CCDS DB by Protein ID:NP_001276659Link to BLAST:NP_001276659.1

Chromosomal Locations for CCDS 81129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 60056664 60056690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60059847 60059953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60062080 60062222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60063094 60063157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60064597 60064675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60067155 60067247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60077181 60077402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60082859 60082984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60084401 60084493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60107456 60107548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109417 60109486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109756 60109871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60110568 60110634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60113379 60113458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60115103 60115146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60119089 60119136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60120940 60121111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60123116 60123307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60124709 60124900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60127016 60127135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60129297 60129411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60130044 60130177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60133608 60133757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60135379 60135495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60136254 60136373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60147474 60147524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2835 nt):
ATGGCAGAAGCAAATCCCCCGAGAGGCAAGATGAGGTTCAGAAGGAATGCGGCCTCCTTCCCTGGGAGCT
TACACTTAGTCCTGGTTTTGCGTCCTACCAGTTTTCTTCAACGGACTTTCACGGACATTGGATTTCGATT
TAGCCAGGAGGATTTTATGCTGAAATTACCAGTTGTTATGCTGAGCTCAGTTAGTGATTTGCTGACATAC
ATTGATGACAAGCAGTTAACCCCTGAGTTAGGCGGCACCTTGCAGTACTGCCACAGTGAATGGATCATCT
TCAGAAATGCCATAGAGAAGTTTGCTGTCACAGTGAAAGAAATGGCTCAGATGTTGCAATCCTTTGGAAC
AGAATTGGCTGAAACAGAGCTACCACAGGATATCCTTTCAATAGAAGAGATTCTGGCAGGTCGAGCCGAA
AGGTATCACCTGTTGAAGAATGACTTAACTGCTGTAACCAAAGAAGGAAAAGTTCTGCTCATGAACCTGC
AAGTGCCTGCCACTGAAGAAACTGTCAGTTCAAGCCTTGAATGTACTCAGCACATAAATGGCGACTGGCA
AACTATTAAAAAGTTGCTGGCTCAGGTGCATGATATGGAAACTGCTTTTGATGGATTTTGGGAAAAACAT
CAGCTGAAAATGGAGCAGTATCTGCAACTGTGGAAGTTTGAACAAGACTTTCAAGAGGCTGTGACTCAAG
TTGAATTTTTATTAAGTCAACAAAGAGAACTGGGTGATATAACAGGGAACTTAGCTCAAGTAAAACAAAG
ACTTAAAAAACTAGAGATCTTAGATGATAAATCTCAGGAACTGTTAACCAAGGCCCGGATTGTGATACTA
CGTGGCCACAAGCTGGCATCGAATCACCACTATGCACTTGATTTAATTTGCCAGCGATGCAATGAACTAC
GCTACCTTTCTGATATTTTAGTTAATGAGATCAGAACAAAGCGGGTCCAACTGAGCAGGACTTTCAAAGT
GCATAGACTCTTACAGCAGGCACGTCAGTGCTGTGATCAAGGGGAATGCCTCCTGGCTAGCCAAGGAATG
GATAAGTTTCAGACTAAAGAAGATGCTCAGAAAGCCCTTCAGGATGTGGACAATTTCCTTCAAATGGCCA
TGCCTTTCATCAATTATGATATCGAAAGCCTGCAATATGAATTTGATGTACTCCTATCTCCTGAACTCAA
GGCTCAAATGCAGAATATACAACTAAAGCTTGAAAATATTCGAAGTGCATTTCAGAACCAACAGGCTGGT
TGTAAGAGCCTAAAAGAAGTACCCGAGGGGGCGTTCCAGAACTTGGTTCCTGCATCTGAAAATGTGATGC
GGTCCAGAATGATATTCTTTTCACCGAAACATGTGGGAATTGGATATTCTTTCTTTCAAGCATGTAGAAT
TTTTTTAAAAGTGAAAAAGTCTTGGAGACAGATTCACGCTCAGAGCAATGTGAAAGTTGAAGCCGTTGAG
GATAGCCAAGAGAAGAATTCTGATCAGTCTCCCAAATTGGACAATAGCTTGGATATTTTAAAGAACCATG
TCCTAAATGAGCTGATACAGACAGAGAGAGCATATGTTCGAGAGCTGTTTACTGTTTTGTTGGGCTACAG
ATCTGAGATGGACAATCCACAGATGTTTGATCTTATGCCACCTCTCCTGAGAAATAAAAAGGATGTTCTC
TTTGGAAATATGGCAGAAATATACGAATTCCATAACAACATTTTCATGAGCAGACTGGAAGATTGCTCTG
ATGCTCCAGAAAGAGTGGGACCTTGCTTCCTGGAAAGGAAGGATGATTTTCAGATGTATGCCAAATATTG
TCAGAATAAACCCAGGTCAGAGTTAATTTGGAGGAAGTATTCTGAATGTGCCTTTTTCCAGGAATGTCAA
CGAAAATTGAAACATCGACTTGGTCTGGATTCCTATTTGCTCAAACCTGTTCAACGAATCACTAAGTATC
AGTTGCTTTTAAAGGAGCTTTTAAAGTATAGCAAAGAAGGTGAAGGAACTACTAAATTAAAGGAGGCACT
TGACTCAATGCTGGAGCTGCTGAAGTCAGTGAATGACTCCATGCATCAGACTGCCATCAATGGCTATGTT
GGAAATATAAATGAGCTGGGCAAGATGGTTCTTCAAGGTTCCTTCAATGTTTGGCTAGGACACCGGAAAG
GTGCTACAAAAATGAAGGATTTTGCACGTTTCAAACCCATGCAGAGACATCTTTTCTTATATGAAAAAGC
TGTTATGTTTTGTAAGAGGCGTTTCGAATCTGGAGAAGGTGCTGATAGATACCCATCATACAGTTTTAAG
CACTGCCTAAAAATGGAAGATGTTGGCATCACAGAACATGTGAAAGGTGATAACCGCAAATTTGAAATAC
GGTATAGTGAGAAGGAAGAAATTTACATTGTTCAGGCTCCAAATGTTGATGTGAAGATGTTATGGCTAAA
AGAAATAAGAAAAATTTTGGTGCAGCAGAAGGAACTTATGACTGCTAAAACCCAGCAGGATCAGGCACTA
GACCAGGACCAACTTTTCCCCCAGCAGCAGAATGCCGAGCTATGCAAAAGCTCACCTTTTTGTGTGTGTG
AGGAAACTCTTTTCAACGCCACAGAAGCAGGAGCAGAAGTGGAGCAAGCTGGTGCCCTGATAAAGGTCAG
GGAGGCAGCTGTGCTAGCTCAAGCAGAGGCAAGTTCAGCAGCTTGGAATGGGATGTTACCATCTGCAGAA
GGCGCTGCTGCAATTGCTGAACATTCATACAATTATTTCTCCTCTAACAATGACCATGGAGAAGATAGGA
CACAAATGAGACACATGTCGGAGGTGACATTCTAG

Translation (944 aa):
MAEANPPRGKMRFRRNAASFPGSLHLVLVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTY
IDDKQLTPELGGTLQYCHSEWIIFRNAIEKFAVTVKEMAQMLQSFGTELAETELPQDILSIEEILAGRAE
RYHLLKNDLTAVTKEGKVLLMNLQVPATEETVSSSLECTQHINGDWQTIKKLLAQVHDMETAFDGFWEKH
QLKMEQYLQLWKFEQDFQEAVTQVEFLLSQQRELGDITGNLAQVKQRLKKLEILDDKSQELLTKARIVIL
RGHKLASNHHYALDLICQRCNELRYLSDILVNEIRTKRVQLSRTFKVHRLLQQARQCCDQGECLLASQGM
DKFQTKEDAQKALQDVDNFLQMAMPFINYDIESLQYEFDVLLSPELKAQMQNIQLKLENIRSAFQNQQAG
CKSLKEVPEGAFQNLVPASENVMRSRMIFFSPKHVGIGYSFFQACRIFLKVKKSWRQIHAQSNVKVEAVE
DSQEKNSDQSPKLDNSLDILKNHVLNELIQTERAYVRELFTVLLGYRSEMDNPQMFDLMPPLLRNKKDVL
FGNMAEIYEFHNNIFMSRLEDCSDAPERVGPCFLERKDDFQMYAKYCQNKPRSELIWRKYSECAFFQECQ
RKLKHRLGLDSYLLKPVQRITKYQLLLKELLKYSKEGEGTTKLKEALDSMLELLKSVNDSMHQTAINGYV
GNINELGKMVLQGSFNVWLGHRKGATKMKDFARFKPMQRHLFLYEKAVMFCKRRFESGEGADRYPSYSFK
HCLKMEDVGITEHVKGDNRKFEIRYSEKEEIYIVQAPNVDVKMLWLKEIRKILVQQKELMTAKTQQDQAL
DQDQLFPQQQNAELCKSSPFCVCEETLFNATEAGAEVEQAGALIKVREAAVLAQAEASSAAWNGMLPSAE
GAAAIAEHSYNYFSSNNDHGEDRTQMRHMSEVTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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