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Report for CCDS81387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81387.1 Public Homo sapiens 1 SLAMF8 24 110 108 CCDS HistoryNCBI Gene:56833Re-query CCDS DB by CCDS ID:81387.1Re-query CCDS DB by GeneID:56833See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81387.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368104.4 ENSP00000357084.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368104.4Link to Ensembl Protein Viewer:ENSP00000357084.4Re-query CCDS DB by Nucleotide ID:ENST00000368104Re-query CCDS DB by Protein ID:ENSP00000357084
Original member Current member NCBI NM_001330741.2 NP_001317670.1 Accepted alive Link to Nucleotide Sequence:NM_001330741.2Link to Protein Sequence:NP_001317670.1Re-query CCDS DB by Nucleotide ID:NM_001330741Re-query CCDS DB by Protein ID:NP_001317670Link to BLAST:NP_001317670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317670.1 176 Q9P0V8-2 176 100% 0 0

Chromosomal Locations for CCDS 81387.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 159826899 159826938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159832876 159833181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159833262 159833369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 159835184 159835260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGTCATGAGGCCCCTGTGGAGTCTGCTTCTCTGGGAAGATGCAGTGCCCAGGCCCGTGGTACAAGTGT
TCATTGCTGTAGAAAGGGATGCTCAGCCCTCCAAGACCTGCCAGGTTTTCTTGTCCTGTTGGGCCCCCAA
CATCAGCGAAATAACCTATAGCTGGCGACGGGAGACAACCATGGACTTTGGTATGGAACCACACAGCCTC
TTCACAGACGGACAGGTGCTGAGCATTTCCCTGGGACCAGGAGACAGAGATGTGGCCTATTCCTGCATTG
TCTCCAACCCTGTCAGCTGGGACTTGGCCACAGTCACGCCCTGGGATAGCTGTCATCATGAGGCAGCACC
AGGGAAGGCCTCCTACAAAGATGTGCTGCTGGTGGTGGTGCCTGTCTCGCTGCTCCTGATGCTGGTTACT
CTCTTCTCTGCCTGGCACTGGTGCCCCTGCTCAGGGAAAAAGAAAAAGGATGTCCATGCTGACAGAGTGG
GTCCAGAGACAGAGAACCCCCTTGTGCAGGATCTGCCATAA

Translation (176 aa):
MVMRPLWSLLLWEDAVPRPVVQVFIAVERDAQPSKTCQVFLSCWAPNISEITYSWRRETTMDFGMEPHSL
FTDGQVLSISLGPGDRDVAYSCIVSNPVSWDLATVTPWDSCHHEAAPGKASYKDVLLVVVPVSLLLMLVT
LFSAWHWCPCSGKKKKDVHADRVGPETENPLVQDLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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