NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81705.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81705.2 Public Homo sapiens 12 ARHGAP9 24 110 108 CCDS HistoryNCBI Gene:64333Re-query CCDS DB by CCDS ID:81705.2Re-query CCDS DB by GeneID:64333See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 81705.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 81705.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393797.7 ENSP00000377386.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393797.7Link to Ensembl Protein Viewer:ENSP00000377386.3Re-query CCDS DB by Nucleotide ID:ENST00000393797Re-query CCDS DB by Protein ID:ENSP00000377386
Original member Current member NCBI NM_001319850.2 NP_001306779.2 Accepted alive Link to Nucleotide Sequence:NM_001319850.2Link to Protein Sequence:NP_001306779.2Re-query CCDS DB by Nucleotide ID:NM_001319850Re-query CCDS DB by Protein ID:NP_001306779Link to BLAST:NP_001306779.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306779.2 750 Q9BRR9-1 750 100% 0 0

Chromosomal Locations for CCDS 81705.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57472517 57472688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57473603 57473708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57474042 57474176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57474423 57474476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57474626 57474703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57474875 57474973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57475291 57475398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57475483 57475615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57475776 57475931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57476071 57476166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57476364 57476454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57476590 57476651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57476871 57476963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57477156 57477269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57477459 57477680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57478540 57478757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57479091 57479406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGCTATCCAGCCGGTGGTGGCCAAGTTCCTGGGGGATCCTAGGGCTGGGCCCCCGAAGCCCTCCTCGGG
GATCCCAGCTCTGTGCCCTCTATGCCTTTACTTATACTGGGGCAGATGGCCAGCAGGTGTCTCTGGCTGA
AGGGGATAGGTTCCTACTGCTTCGAAAGACCAACTCCGACTGGTGGTTGGCAAGACGCCTAGAAGCTCCC
TCCACCTCTCGACCCATCTTCGTCCCAGCAGCCTATATGATAGAGGAATCCATCCCTTCCCAGAGTCCAA
CTACCGTCATCCCCGGCCAATTGCTCTGGACTCCTGGGCCGAAGTTGTTTCATGGTTCCCTGGAGGAGTT
GTCTCAGGCCCTCCCAAGCAGGGCTCAGGCTAGCTCGGAGCAGCCTCCTCCACTTCCCCGCAAAATGTGT
AGGAGCGTCAGCACTGACAATCTGAGCCCCAGCCTTCTGAAGCCTTTCCAGGAAGGACCAAGCGGAAGAT
CCCTCTCCCAGGAAGACTTGCCGTCAGAAGCCAGTGCCAGCACAGCAGGCCCCCAGCCCCTCATGTCAGA
GCCCCCTGTGTACTGTAACCTGGTGGACCTTCGCCGCTGTCCTCGGTCCCCACCCCCAGGCCCTGCATGC
CCCCTGCTGCAGAGGCTGGATGCCTGGGAGCAGCACCTGGACCCCAACTCTGGACGCTGCTTCTACATAA
ATTCACTGACTGGCTGCAAGTCCTGGAAGCCCCCGCGCCGCAGTCGCAGCGAGACGAACCCTGGCTCCAT
GGAGGGGACACAGACCCTGAAGAGGAACAATGATGTCCTGCAACCTCAGGCAAAGGGCTTCAGATCTGAC
ACAGGGACCCCAGAACCGCTTGACCCACAGGGTTCACTCAGCCTCAGCCAACGCACCTCGCAGCTTGACC
CTCCAGCCTTGCAGGCCCCTCGACCTCTGCCGCAGCTCCTGGACGACCCCCATGAGGTGGAAAAGTCGGG
TCTGCTCAACATGACCAAGATTGCCCAAGGGGGGCGCAAGCTCAGGAAGAACTGGGGCCCGTCTTGGGTG
GTGTTAACGGGTAACAGCCTGGTGTTCTACCGAGAGCCACCGCCGACAGCGCCCTCCTCAGGCTGGGGAC
CAGCGGGTAGCCGGCCCGAAAGTAGCGTGGACCTGCGCGGGGCGGCCCTGGCGCACGGCCGCCACCTGTC
CAGCCGCCGCAACGTCCTGCACATCCGCACGATCCCTGGCCACGAGTTCCTGCTGCAGTCGGACCACGAG
ACAGAGCTGCGAGCCTGGCACCGCGCGCTGCGGACTGTCATCGAGCGGCTGGTTAGATGGGTGGAGGCCC
GGAGGGAGGCTCCGACCGGCCGGGACCAAGGGAGTGGGGATCGGGAGAACCCCCTGGAGCTGCGTCTGTC
GGGCTCTGGACCCGCGGAGCTGAGCGCCGGGGAGGACGAAGAAGAGGAGTCGGAGCTGGTGTCCAAGCCG
CTGCTGCGCCTCAGCAGCCGCCGGAGCTCCATTCGGGGGCCCGAAGGCACCGAGCAGAACCGCGTGCGCA
ACAAACTAAAGCGGCTCATCGCGAAGAGACCGCCCTTACAAAGCCTGCAGGAGCGGGGTCTGCTCCGAGA
CCAGGTGTTCGGCTGCCAGTTGGAATCACTCTGCCAGCGGGAAGGAGACACGGTGCCCAGCTTTTTGCGG
CTCTGCATTGCTGCTGTGGATAAAAGAGGTCTAGATGTGGATGGCATTTATCGGGTGAGCGGGAACTTGG
CAGTGGTCCAGAAGCTTCGCTTTCTGGTGGACAGAGAGCGTGCGGTCACCTCCGATGGGAGGTATGTGTT
CCCAGAACAGCCAGGACAAGAAGGTCGGTTAGATTTGGACAGTACTGAGTGGGATGACATTCATGTGGTC
ACCGGAGCCCTGAAGCTTTTTCTCCGGGAGCTGCCCCAGCCTCTGGTGCCACCACTGCTGCTGCCCCATT
TCCGTGCTGCCCTTGCACTCTCCGAATCAGAGCAGTGCCTCTCTCAGATACAAGAATTAATAGGCTCAAT
GCCAAAGCCCAACCATGACACTCTACGGTACCTCCTGGAGCATTTATGCAGGGTGATAGCACACTCAGAT
AAGAATCGCATGACACCCCACAACCTGGGAATTGTGTTTGGACCAACCCTGTTTCGGCCAGAGCAGGAGA
CATCTGACCCAGCAGCCCATGCTCTCTACCCAGGGCAGCTGGTCCAGCTGATGCTCACCAACTTCACCAG
CCTCTTCCCCTGA

Translation (750 aa):
MLSSRWWPSSWGILGLGPRSPPRGSQLCALYAFTYTGADGQQVSLAEGDRFLLLRKTNSDWWLARRLEAP
STSRPIFVPAAYMIEESIPSQSPTTVIPGQLLWTPGPKLFHGSLEELSQALPSRAQASSEQPPPLPRKMC
RSVSTDNLSPSLLKPFQEGPSGRSLSQEDLPSEASASTAGPQPLMSEPPVYCNLVDLRRCPRSPPPGPAC
PLLQRLDAWEQHLDPNSGRCFYINSLTGCKSWKPPRRSRSETNPGSMEGTQTLKRNNDVLQPQAKGFRSD
TGTPEPLDPQGSLSLSQRTSQLDPPALQAPRPLPQLLDDPHEVEKSGLLNMTKIAQGGRKLRKNWGPSWV
VLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHE
TELRAWHRALRTVIERLVRWVEARREAPTGRDQGSGDRENPLELRLSGSGPAELSAGEDEEEESELVSKP
LLRLSSRRSSIRGPEGTEQNRVRNKLKRLIAKRPPLQSLQERGLLRDQVFGCQLESLCQREGDTVPSFLR
LCIAAVDKRGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYVFPEQPGQEGRLDLDSTEWDDIHVV
TGALKLFLRELPQPLVPPLLLPHFRAALALSESEQCLSQIQELIGSMPKPNHDTLRYLLEHLCRVIAHSD
KNRMTPHNLGIVFGPTLFRPEQETSDPAAHALYPGQLVQLMLTNFTSLFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH