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Report for CCDS819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
819.1 Public Homo sapiens 1 ALX3 24 110 108 CCDS HistoryNCBI Gene:257Re-query CCDS DB by CCDS ID:819.1Re-query CCDS DB by GeneID:257See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647563.2 ENSP00000497310.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647563.2Link to Ensembl Protein Viewer:ENSP00000497310.1Re-query CCDS DB by Nucleotide ID:ENST00000647563Re-query CCDS DB by Protein ID:ENSP00000497310
Original member Current member NCBI NM_006492.3 NP_006483.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006492.3Link to Protein Sequence:NP_006483.2Re-query CCDS DB by Nucleotide ID:NM_006492Re-query CCDS DB by Protein ID:NP_006483Link to BLAST:NP_006483.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006483.2 343 O95076 343 100% 0 0

Chromosomal Locations for CCDS 819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110060733 110061041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110061435 110061563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110064587 110064903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110070336 110070612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGACCCCGAGCACTGCGCGCCTTTCCGCGTGGGGCCTGCACCCGGCCCCTATGTGGCCTCGGGGGACG
AGCCTCCGGGCCCGCAGGGAACCCCCGCCGCTGCGCCTCACCTGCACCCCGCGCCGCCCCGCGGCCCGCG
GCTGACCCGCTTTCCGGCCTGCGGGCCCCTGGAGCCCTACCTCCCAGAGCCGGCCAAGCCGCCCGCCAAG
TACCTGCAGGACCTCGGGCCCGGCCCGGCCCTCAACGGCGGCCACTTCTACGAGGGCCCCGCGGAAGCTG
AGGAGAAGACCTCCAAAGCTGCCAGCTTCCCCCAGCTGCCCTTGGACTGCCGAGGGGGCCCCAGAGACGG
GCCCTCTAACTTGCAAGGCTCCCCAGGCCCCTGCCTGGCCAGCCTGCATCTTCCTCTTTCCCCGGGACTC
CCTGACTCCATGGAGTTGGCCAAGAACAAGAGCAAGAAGCGTCGTAACCGCACGACCTTCAGCACATTCC
AGCTGGAGGAGCTGGAGAAGGTCTTCCAGAAAACCCACTATCCTGATGTGTATGCCCGGGAGCAGCTGGC
CCTGCGCACAGACCTGACTGAGGCCCGGGTACAGGTCTGGTTCCAGAACCGCAGAGCCAAGTGGCGGAAG
CGCGAGCGTTATGGGAAGATCCAGGAGGGGCGGAACCCCTTCACGGCTGCCTATGACATCTCTGTGCTGC
CCCGTACTGACAGCCACCCTCAGCTGCAGAACTCCCTGTGGGCCAGTCCAGGATCTGGGAGCCCTGGAGG
CCCCTGCCTTGTGTCTCCAGAGGGCATCCCCTCCCCATGCATGTCTCCATATTCCCACCCCCATGGGAGT
GTGGCTGGCTTCATGGGGGTGCCAGCCCCTTCTGCGGCTCACCCTGGCATCTACTCCATCCATGGCTTTC
CCCCCACCCTGGGGGGCCACAGCTTTGAGCCTTCCTCAGATGGTGACTATAAGTCTCCAAGCCTCGTCTC
GCTCAGGGTAAAGCCCAAGGAGCCACCCGGCCTTCTGAACTGGACCACGTGA

Translation (343 aa):
MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKPPAK
YLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGL
PDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRK
RERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGS
VAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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