NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82077.1 Public Homo sapiens 17 ARHGAP44 24 110 108 CCDS HistoryNCBI Gene:9912Re-query CCDS DB by CCDS ID:82077.1Re-query CCDS DB by GeneID:9912See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340825.7 ENSP00000342566.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340825.7Link to Ensembl Protein Viewer:ENSP00000342566.3Re-query CCDS DB by Nucleotide ID:ENST00000340825Re-query CCDS DB by Protein ID:ENSP00000342566
Original member Current member NCBI NM_001321166.2 NP_001308095.1 Accepted alive Link to Nucleotide Sequence:NM_001321166.2Link to Protein Sequence:NP_001308095.1Re-query CCDS DB by Nucleotide ID:NM_001321166Re-query CCDS DB by Protein ID:NP_001308095Link to BLAST:NP_001308095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308095.1 812 Q17R89-3 812 100% 0 0

Chromosomal Locations for CCDS 82077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12789839 12789891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12894940 12894979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12896407 12896511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12908897 12908973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12915900 12916011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12919755 12919831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12928929 12929046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12941056 12941124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12943588 12943669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12944069 12944196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12949140 12949251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12949649 12949730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12952501 12952581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12955867 12955980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12956655 12956746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12958717 12958897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12974089 12974310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12980058 12980233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12984531 12984908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12990032 12990171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGAAGAAGCAGTTCAATCGCATGCGCCAGCTGGCCAACCAGACGGTGGGCAGGGCTGAAAAGACAGAAG
TTTTGAGTGAAGACCTTCTTCAGGTGGAGAAGCGTCTGGAGCTGGTGAAACAGGTGTCCCACAGCACGCA
CAAGAAGCTCACCGCATGTCTGCAGGGCCAGCAAGGGGCAGAGGCTGACAAGCGCTCCAAAAAGTTGCCT
TTGACAACACTGGCTCAGTGTCTGATGGAGGGGTCAGCTATCCTGGGAGATGACACACTTCTTGGGAAGA
TGCTGAAACTCTGTGGAGAGACGGAGGACAAGCTGGCTCAGGAGCTGATACATTTTGAGTTGCAAGTAGA
GAGAGACGTGATTGAGCCCCTGTTTTTGCTGGCGGAGGTGGAAATCCCAAATATTCAAAAGCAGAGGAAA
CACTTAGCCAAGTTGGTGCTGGACATGGATTCCTCACGAACCAGGTGGCAGCAGACTTCCAAGTCTTCAG
GTTTGTCCAGCAGCTTACAGCCTGCGGGTGCCAAGGCTGATGCCCTCAGGGAAGAAATGGAAGAGGCTGC
CAACAGAGTGGAGATTTGCAGGGACCAGCTCTCAGCTGATATGTACAGTTTTGTGGCCAAAGAAATTGAC
TATGCAAACTACTTTCAAACGCTAATAGAAGTGCAAGCTGAATACCACAGGAAGTCCCTGACACTATTGC
AGGCTGTATTGCCTCAGATCAAAGCACAACAGGAGGCCTGGGTAGAGAAGCCTTCCTTCGGGAAGCCGCT
GGAGGAGCACCTCACCATCAGCGGCCGGGAGATCGCCTTCCCCATCGAGGCGTGTGTGACCATGCTGCTT
GAGTGTGGGATGCAGGAGGAGGGACTCTTCCGAGTAGCCCCCTCTGCCTCCAAACTGAAGAAGCTGAAAG
CGGCCCTGGACTGCTGCGTGGTGGATGTGCAGGAGTACTCGGCAGACCCCCACGCAATTGCAGGAGCTTT
GAAATCTTACCTCCGAGAGTTGCCAGAACCTCTTATGACCTTTGAACTCTATGATGAGTGGATCCAGGCT
TCCAATGTCCAGGAGCAAGACAAGAAGCTTCAGGCTCTATGGAATGCTTGTGAAAAGTTGCCCAAGGCCA
ATCACAACAACATCCGATACTTGATAAAATTTTTATCCAAGCTGTCAGAATATCAAGATGTAAACAAGAT
GACTCCCAGTAATATGGCAATTGTTTTAGGACCCAACCTCCTATGGCCACAAGCAGAAGGGAACATTACA
GAGATGATGACCACAGTGTCGCTGCAAATTGTTGGGATCATTGAACCTATCATCCAGCATGCAGACTGGT
TCTTCCCTGGGGAGATAGAGTTCAACATTACTGGCAATTATGGGAGTCCAGTACACGTGAACCATAATGC
CAACTACAGCTCAATGCCCTCCCCAGACATGGACCCTGCTGACCGGCGCCAGCCCGAGCAGGCCCGCCGG
CCCCTCAGCGTCGCCACGGATAATATGATGCTGGAGTTTTACAAAAAGGATGGCATGGGTGTGAGGGTCA
TGGACACAAACTGGGTGGCTCGAAGAGGCTCCTCGGCCGGTCGGAAAGTGTCCTGCGCCCCGCCCTCCAT
GCAGCCTCCCGCCCCGCCCGCCGAGCTGGCTGCGCCCCTGCCTTCGCCGCTGCCGGAGCAGCCCCTGGAC
AGCCCCGCGGCCCCCGCGCTCTCTCCATCCGGCCTGGGCCTCCAGCCTGGGCCCGAGCGCACCAGCACAA
CAAAAAGCAAGGAACTTTCTCCAGGCTCTGCACAGAAAGGAAGTCCAGGCTCCAGCCAGGGCACAGCCTG
TGCAGGGACTCAACCAGGGGCTCAACCTGGAGCTCAGCCGGGCGCCAGCCCCAGCCCCAGCCAGCCGCCT
GCAGACCAGAGTCCTCACACCCTCCGGAAAGTTTCAAAGAAGCTGGCACCGATTCCACCCAAGGTCCCCT
TTGGCCAGCCGGGGGCTATGGCAGACCAGTCCGCTGGCCAGCCGTCCCCAGTCAGCCTGTCCCCCACCCC
GCCCAGCACCCCGTCACCCTATGGACTGAGCTACCCTCAGGGGTACTCCTTGGCCTCGGGCCAGCTCTCC
CCAGCTGCAGCTCCTCCCCTGGCCTCTCCTTCTGTCTTTACAAGCACTTTGAGCAAATCGCGGCCCACTC
CTAAGCCGCGACAGAGACCTACTCTGCCGCCTCCTCAGCCTCCCACAGTAAACCTCTCGGCCTCTAGTCC
ACAGTCCACGGAGGCCCCCATGCTAGATGGCATGTCCCCTGGGGAAAGCATGTCTACAGATCTTGTCCAC
TTTGATATTCCCTCGATCCACATAGAGCTCGGGTCGACGCTCCGCCTGAGTCCCCTGGAGCACATGCGGC
GACACTCAGTAACTGACAAGAGGGACTCGGAGGAGGAGTCTGAGAGCACCGCCCTCTGA

Translation (812 aa):
MKKQFNRMRQLANQTVGRAEKTEVLSEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGAEADKRSKKLP
LTTLAQCLMEGSAILGDDTLLGKMLKLCGETEDKLAQELIHFELQVERDVIEPLFLLAEVEIPNIQKQRK
HLAKLVLDMDSSRTRWQQTSKSSGLSSSLQPAGAKADALREEMEEAANRVEICRDQLSADMYSFVAKEID
YANYFQTLIEVQAEYHRKSLTLLQAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPIEACVTMLL
ECGMQEEGLFRVAPSASKLKKLKAALDCCVVDVQEYSADPHAIAGALKSYLRELPEPLMTFELYDEWIQA
SNVQEQDKKLQALWNACEKLPKANHNNIRYLIKFLSKLSEYQDVNKMTPSNMAIVLGPNLLWPQAEGNIT
EMMTTVSLQIVGIIEPIIQHADWFFPGEIEFNITGNYGSPVHVNHNANYSSMPSPDMDPADRRQPEQARR
PLSVATDNMMLEFYKKDGMGVRVMDTNWVARRGSSAGRKVSCAPPSMQPPAPPAELAAPLPSPLPEQPLD
SPAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSSQGTACAGTQPGAQPGAQPGASPSPSQPP
ADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQPSPVSLSPTPPSTPSPYGLSYPQGYSLASGQLS
PAAAPPLASPSVFTSTLSKSRPTPKPRQRPTLPPPQPPTVNLSASSPQSTEAPMLDGMSPGESMSTDLVH
FDIPSIHIELGSTLRLSPLEHMRRHSVTDKRDSEEESESTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH